miRNA display CGI


Results 61 - 80 of 391 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6688 5' -68.2 NC_001847.1 + 3992 0.67 0.323689
Target:  5'- ---cGGGCgcgcGGCCCCGcggggcGCCGggcccggcGCCCGCCu -3'
miRNA:   3'- cagaCCCG----CCGGGGC------CGGC--------CGGGUGG- -5'
6688 5' -68.2 NC_001847.1 + 101160 0.66 0.36666
Target:  5'- -gCUGGGCccagCCCGGCCaGCgCGCCc -3'
miRNA:   3'- caGACCCGccg-GGGCCGGcCGgGUGG- -5'
6688 5' -68.2 NC_001847.1 + 29461 0.66 0.344694
Target:  5'- ---cGcGGCGGCCCgCGcGUCGGCCUgggcGCUg -3'
miRNA:   3'- cagaC-CCGCCGGG-GC-CGGCCGGG----UGG- -5'
6688 5' -68.2 NC_001847.1 + 134223 0.66 0.337585
Target:  5'- ---aGGGCGGCggugggaaGGCCgGGUCCGCCu -3'
miRNA:   3'- cagaCCCGCCGggg-----CCGG-CCGGGUGG- -5'
6688 5' -68.2 NC_001847.1 + 55486 0.66 0.337585
Target:  5'- aUCgUGGcGCGGCUCCGGCaguGGUUCGgCg -3'
miRNA:   3'- cAG-ACC-CGCCGGGGCCGg--CCGGGUgG- -5'
6688 5' -68.2 NC_001847.1 + 18668 0.66 0.367409
Target:  5'- ---cGGGagugcagguacgcgaGGCCCCGcaGCaCGGCCCGCg -3'
miRNA:   3'- cagaCCCg--------------CCGGGGC--CG-GCCGGGUGg -5'
6688 5' -68.2 NC_001847.1 + 93960 0.66 0.36442
Target:  5'- uUCUGGGCGcccucuuaacacgcGCgCCCGcGCCGcgcGCUCACUc -3'
miRNA:   3'- cAGACCCGC--------------CG-GGGC-CGGC---CGGGUGG- -5'
6688 5' -68.2 NC_001847.1 + 26991 0.66 0.35191
Target:  5'- ---cGGcCGGCUagccagcuccgaCCGGCCGGCCUucuGCCa -3'
miRNA:   3'- cagaCCcGCCGG------------GGCCGGCCGGG---UGG- -5'
6688 5' -68.2 NC_001847.1 + 34585 0.66 0.35191
Target:  5'- -cCU-GGCGGCaauaaucgCCgCGGCCGGCUCcCCg -3'
miRNA:   3'- caGAcCCGCCG--------GG-GCCGGCCGGGuGG- -5'
6688 5' -68.2 NC_001847.1 + 10570 0.66 0.359232
Target:  5'- ---cGGGCccGGCgCCGG-CGGCCCcCCc -3'
miRNA:   3'- cagaCCCG--CCGgGGCCgGCCGGGuGG- -5'
6688 5' -68.2 NC_001847.1 + 50354 0.66 0.374193
Target:  5'- ---aGGGUaaagcuGGCgCUGGCCGGCgUCGCCc -3'
miRNA:   3'- cagaCCCG------CCGgGGCCGGCCG-GGUGG- -5'
6688 5' -68.2 NC_001847.1 + 35388 0.66 0.374193
Target:  5'- ---cGcGGCGGCUCacugccgGGCCGGCCaacgCACCc -3'
miRNA:   3'- cagaC-CCGCCGGGg------CCGGCCGG----GUGG- -5'
6688 5' -68.2 NC_001847.1 + 117019 0.67 0.316902
Target:  5'- -cCUGGGCGcuccuGUcugCCCGGCgggGGCUCGCCg -3'
miRNA:   3'- caGACCCGC-----CG---GGGCCGg--CCGGGUGG- -5'
6688 5' -68.2 NC_001847.1 + 127881 0.67 0.310224
Target:  5'- cGUCUc-GCGuGCCCCcGCCGcGCCCGCa -3'
miRNA:   3'- -CAGAccCGC-CGGGGcCGGC-CGGGUGg -5'
6688 5' -68.2 NC_001847.1 + 71374 0.67 0.297189
Target:  5'- cGUCcGcGCGGUCuCCgGGCCuGGCCCGCg -3'
miRNA:   3'- -CAGaCcCGCCGG-GG-CCGG-CCGGGUGg -5'
6688 5' -68.2 NC_001847.1 + 71076 0.67 0.297189
Target:  5'- ---aGGGCGGCgaggCGGCCGGCCagggcguccagCGCCc -3'
miRNA:   3'- cagaCCCGCCGgg--GCCGGCCGG-----------GUGG- -5'
6688 5' -68.2 NC_001847.1 + 30491 0.67 0.310224
Target:  5'- -cCUGGGCcgGGCgCUGGaCgGGCgCGCCg -3'
miRNA:   3'- caGACCCG--CCGgGGCC-GgCCGgGUGG- -5'
6688 5' -68.2 NC_001847.1 + 31836 0.67 0.323689
Target:  5'- ---gGGGuUGGCgCgCGGCCGcCCCGCCg -3'
miRNA:   3'- cagaCCC-GCCGgG-GCCGGCcGGGUGG- -5'
6688 5' -68.2 NC_001847.1 + 36415 0.67 0.316902
Target:  5'- ---cGGcccCGGCCCCGGCuuCGGCCCcgGCUu -3'
miRNA:   3'- cagaCCc--GCCGGGGCCG--GCCGGG--UGG- -5'
6688 5' -68.2 NC_001847.1 + 13480 0.67 0.316902
Target:  5'- gGUCgcGGGCuuGGCCUCGGCCaucaGCCCGa- -3'
miRNA:   3'- -CAGa-CCCG--CCGGGGCCGGc---CGGGUgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.