miRNA display CGI


Results 81 - 100 of 487 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6689 3' -66.3 NC_001847.1 + 19933 0.66 0.457629
Target:  5'- aCCUGCCGcaccuuuugcagcaGCCGCCGaauccCGAGGGGGa -3'
miRNA:   3'- gGGGCGGC--------------CGGCGGCgcc--GCUCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 117901 0.66 0.451636
Target:  5'- uCCCCGCCcuuguugaGGuuGaCGCGGUGuGGGGc -3'
miRNA:   3'- -GGGGCGG--------CCggCgGCGCCGCuCUCUc -5'
6689 3' -66.3 NC_001847.1 + 81222 0.66 0.476737
Target:  5'- -gCCGCCGucGCCGUCGCcuccgGGCGGGGccgucgcGAGg -3'
miRNA:   3'- ggGGCGGC--CGGCGGCG-----CCGCUCU-------CUC- -5'
6689 3' -66.3 NC_001847.1 + 48197 0.66 0.477615
Target:  5'- gCCgCGCCGGCgGCCaG-GGcCGAG-GAGc -3'
miRNA:   3'- -GGgGCGGCCGgCGG-CgCC-GCUCuCUC- -5'
6689 3' -66.3 NC_001847.1 + 85936 0.66 0.443149
Target:  5'- gCCCGCgGGCC-CCG-GcGCGAGGGc- -3'
miRNA:   3'- gGGGCGgCCGGcGGCgC-CGCUCUCuc -5'
6689 3' -66.3 NC_001847.1 + 29145 0.66 0.443149
Target:  5'- -aCCGCUGcGCCGUCGCcugccgcgaGGCGcuGGAGg -3'
miRNA:   3'- ggGGCGGC-CGGCGGCG---------CCGCucUCUC- -5'
6689 3' -66.3 NC_001847.1 + 53711 0.66 0.443149
Target:  5'- gCgCCGCCGGCgGCuCGCGGgGcGGAu-- -3'
miRNA:   3'- -GgGGCGGCCGgCG-GCGCCgC-UCUcuc -5'
6689 3' -66.3 NC_001847.1 + 50060 0.66 0.451636
Target:  5'- -gCCGCgGGuCCGCgCGCGGCGcGGAcccGGGc -3'
miRNA:   3'- ggGGCGgCC-GGCG-GCGCCGC-UCU---CUC- -5'
6689 3' -66.3 NC_001847.1 + 83175 0.66 0.451636
Target:  5'- gCCCGaCgGGCUGgCGgaCGGCGGGGGGc -3'
miRNA:   3'- gGGGC-GgCCGGCgGC--GCCGCUCUCUc -5'
6689 3' -66.3 NC_001847.1 + 30919 0.66 0.468872
Target:  5'- gCgCGCCGGCgG-UGCGGCG-GAGGc -3'
miRNA:   3'- gGgGCGGCCGgCgGCGCCGCuCUCUc -5'
6689 3' -66.3 NC_001847.1 + 21502 0.66 0.460211
Target:  5'- aUuuGCCgGGCgCGCCuCGGCGGGGGc- -3'
miRNA:   3'- gGggCGG-CCG-GCGGcGCCGCUCUCuc -5'
6689 3' -66.3 NC_001847.1 + 35893 0.66 0.460211
Target:  5'- ---aGUCGGCgGCgGCGGCGuGGGAc -3'
miRNA:   3'- ggggCGGCCGgCGgCGCCGCuCUCUc -5'
6689 3' -66.3 NC_001847.1 + 131345 0.66 0.43142
Target:  5'- gCCgCCGcCCGGCCGCgugcgcuucggcggCGCGGgCGAcacccgcGAGGGc -3'
miRNA:   3'- -GG-GGC-GGCCGGCG--------------GCGCC-GCU-------CUCUC- -5'
6689 3' -66.3 NC_001847.1 + 4403 0.66 0.460211
Target:  5'- uCgCCGCCGucgacGCCGaCgGCGGCGAGcgcgcgccgcAGGGa -3'
miRNA:   3'- -GgGGCGGC-----CGGC-GgCGCCGCUC----------UCUC- -5'
6689 3' -66.3 NC_001847.1 + 132365 0.66 0.434753
Target:  5'- gCCCUGgaGGCCGCC--GGCGGGGGc- -3'
miRNA:   3'- -GGGGCggCCGGCGGcgCCGCUCUCuc -5'
6689 3' -66.3 NC_001847.1 + 30252 0.66 0.443149
Target:  5'- -gUCGCUGGCggcguugcagcgCGCCGCGGCGcAGAcGAc -3'
miRNA:   3'- ggGGCGGCCG------------GCGGCGCCGC-UCU-CUc -5'
6689 3' -66.3 NC_001847.1 + 80691 0.66 0.443149
Target:  5'- gCgCCGgCGGCgGCUGCGGCuGGaAGAa -3'
miRNA:   3'- -GgGGCgGCCGgCGGCGCCGcUC-UCUc -5'
6689 3' -66.3 NC_001847.1 + 93821 0.66 0.434753
Target:  5'- uCCCCGCUGGacuuugCGCCGC-GCGAGc--- -3'
miRNA:   3'- -GGGGCGGCCg-----GCGGCGcCGCUCucuc -5'
6689 3' -66.3 NC_001847.1 + 5239 0.66 0.434753
Target:  5'- gCUCCGUgcaGGUCuCCGCGG-GGGAGGGg -3'
miRNA:   3'- -GGGGCGg--CCGGcGGCGCCgCUCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 32482 0.66 0.434753
Target:  5'- cCCCCGCCcucgcGGCCGCuCcCGGCGcgucaccccGAGAc -3'
miRNA:   3'- -GGGGCGG-----CCGGCG-GcGCCGCu--------CUCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.