miRNA display CGI


Results 101 - 120 of 487 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6689 3' -66.3 NC_001847.1 + 31853 0.66 0.434753
Target:  5'- gCCCCGCC-GCCGCCGCuGCu------ -3'
miRNA:   3'- -GGGGCGGcCGGCGGCGcCGcucucuc -5'
6689 3' -66.3 NC_001847.1 + 58228 0.66 0.434753
Target:  5'- gCCCGCCGGgCGgCaGCGGCGGc---- -3'
miRNA:   3'- gGGGCGGCCgGCgG-CGCCGCUcucuc -5'
6689 3' -66.3 NC_001847.1 + 64868 0.66 0.460211
Target:  5'- aCCCGCCaGGCgCGCguccuCGCGguacaGCGAGAGcGg -3'
miRNA:   3'- gGGGCGG-CCG-GCG-----GCGC-----CGCUCUCuC- -5'
6689 3' -66.3 NC_001847.1 + 29145 0.66 0.443149
Target:  5'- -aCCGCUGcGCCGUCGCcugccgcgaGGCGcuGGAGg -3'
miRNA:   3'- ggGGCGGC-CGGCGGCG---------CCGCucUCUC- -5'
6689 3' -66.3 NC_001847.1 + 75227 0.66 0.468872
Target:  5'- uUCCGCCGGCucuCGCCGCGcGCGc----- -3'
miRNA:   3'- gGGGCGGCCG---GCGGCGC-CGCucucuc -5'
6689 3' -66.3 NC_001847.1 + 13924 0.66 0.434753
Target:  5'- --gCGCuCGGUgccgCGCCGCGGC-AGGGGGg -3'
miRNA:   3'- gggGCG-GCCG----GCGGCGCCGcUCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 32482 0.66 0.434753
Target:  5'- cCCCCGCCcucgcGGCCGCuCcCGGCGcgucaccccGAGAc -3'
miRNA:   3'- -GGGGCGG-----CCGGCG-GcGCCGCu--------CUCUc -5'
6689 3' -66.3 NC_001847.1 + 109940 0.66 0.443149
Target:  5'- uCUuuGCCGGCCGCgCGCGGgGc----- -3'
miRNA:   3'- -GGggCGGCCGGCG-GCGCCgCucucuc -5'
6689 3' -66.3 NC_001847.1 + 133218 0.67 0.410129
Target:  5'- gCCCGagUGGCCGCCGCGccGCGGcGGGc -3'
miRNA:   3'- gGGGCg-GCCGGCGGCGC--CGCUcUCUc -5'
6689 3' -66.3 NC_001847.1 + 54045 0.67 0.410129
Target:  5'- uCCUCGUCGG-CG-CGCGGCGAGGc-- -3'
miRNA:   3'- -GGGGCGGCCgGCgGCGCCGCUCUcuc -5'
6689 3' -66.3 NC_001847.1 + 34987 0.67 0.410129
Target:  5'- cCCCCGCgcuguCGGCCcucuucccgGCCGCGGaCGuGGGc- -3'
miRNA:   3'- -GGGGCG-----GCCGG---------CGGCGCC-GCuCUCuc -5'
6689 3' -66.3 NC_001847.1 + 81555 0.67 0.402116
Target:  5'- gCUCGCCGGCC-CCGCGcagcuGCGcGGGGc -3'
miRNA:   3'- gGGGCGGCCGGcGGCGC-----CGCuCUCUc -5'
6689 3' -66.3 NC_001847.1 + 36993 0.67 0.410129
Target:  5'- gCCCgCGCCGaGCgGCgGCGGCGcGcucGAGc -3'
miRNA:   3'- -GGG-GCGGC-CGgCGgCGCCGCuCu--CUC- -5'
6689 3' -66.3 NC_001847.1 + 66218 0.67 0.378683
Target:  5'- gCCCG-CGGCCGCCGCGcCGAa---- -3'
miRNA:   3'- gGGGCgGCCGGCGGCGCcGCUcucuc -5'
6689 3' -66.3 NC_001847.1 + 59750 0.67 0.378683
Target:  5'- gCCCGCC--UCGCgGCGGCGAcgcGAGAc -3'
miRNA:   3'- gGGGCGGccGGCGgCGCCGCU---CUCUc -5'
6689 3' -66.3 NC_001847.1 + 47569 0.67 0.378683
Target:  5'- gCCCGgCGGCCGCgcaCGCGcCGAGGaAGg -3'
miRNA:   3'- gGGGCgGCCGGCG---GCGCcGCUCUcUC- -5'
6689 3' -66.3 NC_001847.1 + 69081 0.67 0.410129
Target:  5'- gCUCGCCGcgucuggcGCCGCgCGCGGaCGGGcGGGc -3'
miRNA:   3'- gGGGCGGC--------CGGCG-GCGCC-GCUCuCUC- -5'
6689 3' -66.3 NC_001847.1 + 97067 0.67 0.412552
Target:  5'- uCCCCGaccgcggCGGCCgccgcgcgcagcuuaGCCGCGGCGGcgcgguuggccgcGAGAa -3'
miRNA:   3'- -GGGGCg------GCCGG---------------CGGCGCCGCU-------------CUCUc -5'
6689 3' -66.3 NC_001847.1 + 15033 0.67 0.378683
Target:  5'- -gCCG-CGGCCGCCG-GGCGAGcugugcGAGc -3'
miRNA:   3'- ggGGCgGCCGGCGGCgCCGCUCu-----CUC- -5'
6689 3' -66.3 NC_001847.1 + 48832 0.67 0.413362
Target:  5'- gCCuuGCCgcgcgggggcgccucGGCCG-CGCGGCGcGAGGu -3'
miRNA:   3'- -GGggCGG---------------CCGGCgGCGCCGCuCUCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.