miRNA display CGI


Results 121 - 140 of 487 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6689 3' -66.3 NC_001847.1 + 71211 0.67 0.402116
Target:  5'- cCCCCG-CGGCCG-CGCugGGUGAuGGAGu -3'
miRNA:   3'- -GGGGCgGCCGGCgGCG--CCGCUcUCUC- -5'
6689 3' -66.3 NC_001847.1 + 32779 0.67 0.410129
Target:  5'- -aCgGCCGGCCGCUGgaCGcGCGAGuccGAGc -3'
miRNA:   3'- ggGgCGGCCGGCGGC--GC-CGCUCu--CUC- -5'
6689 3' -66.3 NC_001847.1 + 65265 0.67 0.410129
Target:  5'- gCCCgCgGCCGGuCCGCaGCGGCGGGc--- -3'
miRNA:   3'- -GGG-G-CGGCC-GGCGgCGCCGCUCucuc -5'
6689 3' -66.3 NC_001847.1 + 102817 0.67 0.415797
Target:  5'- uCCgCGCCGcGCCG-CGCGGgcccccugcgacccCGGGGGGGu -3'
miRNA:   3'- -GGgGCGGC-CGGCgGCGCC--------------GCUCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 48832 0.67 0.413362
Target:  5'- gCCuuGCCgcgcgggggcgccucGGCCG-CGCGGCGcGAGGu -3'
miRNA:   3'- -GGggCGG---------------CCGGCgGCGCCGCuCUCUc -5'
6689 3' -66.3 NC_001847.1 + 36993 0.67 0.410129
Target:  5'- gCCCgCGCCGaGCgGCgGCGGCGcGcucGAGc -3'
miRNA:   3'- -GGG-GCGGC-CGgCGgCGCCGCuCu--CUC- -5'
6689 3' -66.3 NC_001847.1 + 54045 0.67 0.410129
Target:  5'- uCCUCGUCGG-CG-CGCGGCGAGGc-- -3'
miRNA:   3'- -GGGGCGGCCgGCgGCGCCGCUCUcuc -5'
6689 3' -66.3 NC_001847.1 + 133218 0.67 0.410129
Target:  5'- gCCCGagUGGCCGCCGCGccGCGGcGGGc -3'
miRNA:   3'- gGGGCg-GCCGGCGGCGC--CGCUcUCUc -5'
6689 3' -66.3 NC_001847.1 + 135122 0.67 0.417425
Target:  5'- aCCCCcCCGGggucgcagggggcCCGCgcggCGCGGCGcGGAGGG -3'
miRNA:   3'- -GGGGcGGCC-------------GGCG----GCGCCGC-UCUCUC -5'
6689 3' -66.3 NC_001847.1 + 104543 0.67 0.402116
Target:  5'- gCCgCGCCgcGGCCaGCCGCGcGC-AGAGGu -3'
miRNA:   3'- -GGgGCGG--CCGG-CGGCGC-CGcUCUCUc -5'
6689 3' -66.3 NC_001847.1 + 67938 0.67 0.402116
Target:  5'- gUCCGCgcagcacgaCGGCacacaGCCGCGGC-AGGGGGu -3'
miRNA:   3'- gGGGCG---------GCCGg----CGGCGCCGcUCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 47152 0.67 0.394203
Target:  5'- gCCCCucgggcCCGGCCGCaaaGUGcCGAGGGAu -3'
miRNA:   3'- -GGGGc-----GGCCGGCGg--CGCcGCUCUCUc -5'
6689 3' -66.3 NC_001847.1 + 83237 0.67 0.394203
Target:  5'- aCgCCGCggccggggcggCGGCCGaaagCGCGGCGGGGGcGGg -3'
miRNA:   3'- -GgGGCG-----------GCCGGCg---GCGCCGCUCUC-UC- -5'
6689 3' -66.3 NC_001847.1 + 133170 0.67 0.40132
Target:  5'- gCCCggggaggCGCUGGCggCGCCGCccGGCGAGGacGAGc -3'
miRNA:   3'- -GGG-------GCGGCCG--GCGGCG--CCGCUCU--CUC- -5'
6689 3' -66.3 NC_001847.1 + 90394 0.67 0.40132
Target:  5'- gCCC-CCGGCCGUacgugcuUGUGGCGGGccacGAGg -3'
miRNA:   3'- gGGGcGGCCGGCG-------GCGCCGCUCu---CUC- -5'
6689 3' -66.3 NC_001847.1 + 97067 0.67 0.412552
Target:  5'- uCCCCGaccgcggCGGCCgccgcgcgcagcuuaGCCGCGGCGGcgcgguuggccgcGAGAa -3'
miRNA:   3'- -GGGGCg------GCCGG---------------CGGCGCCGCU-------------CUCUc -5'
6689 3' -66.3 NC_001847.1 + 106301 0.67 0.40132
Target:  5'- uCCCCGaCCGGCgGCaGCGGCGccgucacgcucccGGuGAu -3'
miRNA:   3'- -GGGGC-GGCCGgCGgCGCCGC-------------UCuCUc -5'
6689 3' -66.3 NC_001847.1 + 35450 0.67 0.402116
Target:  5'- -gCgGCgCGacGCgGCCGCGGCGcGAGAGg -3'
miRNA:   3'- ggGgCG-GC--CGgCGGCGCCGCuCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 105166 0.67 0.394203
Target:  5'- gCCgCGCCGGCCcgGCCGCgucGGCGGcGGcGg -3'
miRNA:   3'- -GGgGCGGCCGG--CGGCG---CCGCUcUCuC- -5'
6689 3' -66.3 NC_001847.1 + 35302 0.67 0.418241
Target:  5'- gCCCCGCCGaGCgGCgCGCGcuggaaGCGGGcgugcgccuGGAGc -3'
miRNA:   3'- -GGGGCGGC-CGgCG-GCGC------CGCUC---------UCUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.