Results 61 - 80 of 487 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
6689 | 3' | -66.3 | NC_001847.1 | + | 15925 | 0.73 | 0.162593 |
Target: 5'- gCCCCGCCgccccgcGGUgGCCGCGGCGccGAcGAGc -3' miRNA: 3'- -GGGGCGG-------CCGgCGGCGCCGCu-CU-CUC- -5' |
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6689 | 3' | -66.3 | NC_001847.1 | + | 80620 | 0.73 | 0.155059 |
Target: 5'- cCCCCGCCgcGGuuGCCGaUGGCGAcggcggcgcucgcGGGAGa -3' miRNA: 3'- -GGGGCGG--CCggCGGC-GCCGCU-------------CUCUC- -5' |
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6689 | 3' | -66.3 | NC_001847.1 | + | 74399 | 0.73 | 0.170856 |
Target: 5'- -aCCGCgCGGCCGCCGCGcGCGcGcGGGc -3' miRNA: 3'- ggGGCG-GCCGGCGGCGC-CGCuCuCUC- -5' |
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6689 | 3' | -66.3 | NC_001847.1 | + | 61434 | 0.72 | 0.205853 |
Target: 5'- gCCCG-CGGCCGCgccgccgggCGCGGCGAGGcGGu -3' miRNA: 3'- gGGGCgGCCGGCG---------GCGCCGCUCUcUC- -5' |
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6689 | 3' | -66.3 | NC_001847.1 | + | 31454 | 0.72 | 0.205853 |
Target: 5'- gCCCCggcGCgGGCCGCCGCcGCGcguGGAGGu -3' miRNA: 3'- -GGGG---CGgCCGGCGGCGcCGC---UCUCUc -5' |
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6689 | 3' | -66.3 | NC_001847.1 | + | 33233 | 0.72 | 0.18331 |
Target: 5'- gCCgCGCCGGgCGCCGCGGCGc----- -3' miRNA: 3'- -GGgGCGGCCgGCGGCGCCGCucucuc -5' |
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6689 | 3' | -66.3 | NC_001847.1 | + | 97700 | 0.72 | 0.18331 |
Target: 5'- gCCCGCUGcugcgcucGCCGUCGuCGGCGGGGGcAGa -3' miRNA: 3'- gGGGCGGC--------CGGCGGC-GCCGCUCUC-UC- -5' |
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6689 | 3' | -66.3 | NC_001847.1 | + | 35943 | 0.72 | 0.187637 |
Target: 5'- gCCgCCGCgCGGCCGCCuCGcGCGAGGaccacGAGg -3' miRNA: 3'- -GG-GGCG-GCCGGCGGcGC-CGCUCU-----CUC- -5' |
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6689 | 3' | -66.3 | NC_001847.1 | + | 41621 | 0.72 | 0.187637 |
Target: 5'- gCUCCGCCgugauGGCCGCgaGCGGCGcgccGGGGGGc -3' miRNA: 3'- -GGGGCGG-----CCGGCGg-CGCCGC----UCUCUC- -5' |
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6689 | 3' | -66.3 | NC_001847.1 | + | 14143 | 0.72 | 0.205853 |
Target: 5'- cUCCgGCCGGCUGCgcaGCGGCGGccGGGg -3' miRNA: 3'- -GGGgCGGCCGGCGg--CGCCGCUcuCUC- -5' |
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6689 | 3' | -66.3 | NC_001847.1 | + | 88291 | 0.72 | 0.20538 |
Target: 5'- gCCUGCUgGGCCGacgcggcUCGCGGCGAG-GAGg -3' miRNA: 3'- gGGGCGG-CCGGC-------GGCGCCGCUCuCUC- -5' |
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6689 | 3' | -66.3 | NC_001847.1 | + | 134089 | 0.72 | 0.200696 |
Target: 5'- gCCCGgC-GCCGCCGCuugcucuGGCGAGcAGAGg -3' miRNA: 3'- gGGGCgGcCGGCGGCG-------CCGCUC-UCUC- -5' |
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6689 | 3' | -66.3 | NC_001847.1 | + | 59374 | 0.72 | 0.196561 |
Target: 5'- gCCCG-CGGCCGUguucacccgCGCGGCGGGcGAGc -3' miRNA: 3'- gGGGCgGCCGGCG---------GCGCCGCUCuCUC- -5' |
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6689 | 3' | -66.3 | NC_001847.1 | + | 73200 | 0.72 | 0.18331 |
Target: 5'- gCCCgCGCgGGCCGCgccgccgcugaCGCGGagGAGGGGGg -3' miRNA: 3'- -GGG-GCGgCCGGCG-----------GCGCCg-CUCUCUC- -5' |
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6689 | 3' | -66.3 | NC_001847.1 | + | 125051 | 0.72 | 0.187637 |
Target: 5'- uCCCCGCCGcuugugcucCCGCgCGCGGCGGGGc-- -3' miRNA: 3'- -GGGGCGGCc--------GGCG-GCGCCGCUCUcuc -5' |
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6689 | 3' | -66.3 | NC_001847.1 | + | 88229 | 0.72 | 0.187637 |
Target: 5'- gCCUCGCCggagccgaGGCCGgCGCGGCGcGGGGc -3' miRNA: 3'- -GGGGCGG--------CCGGCgGCGCCGCuCUCUc -5' |
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6689 | 3' | -66.3 | NC_001847.1 | + | 134267 | 0.72 | 0.205853 |
Target: 5'- gCCCCggcGCgGGCCGCCGCcGCGcguGGAGGu -3' miRNA: 3'- -GGGG---CGgCCGGCGGCGcCGC---UCUCUc -5' |
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6689 | 3' | -66.3 | NC_001847.1 | + | 76915 | 0.72 | 0.205853 |
Target: 5'- gCgCCGCCGcuGCCGCC-CGGCGGGcAGAu -3' miRNA: 3'- -GgGGCGGC--CGGCGGcGCCGCUC-UCUc -5' |
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6689 | 3' | -66.3 | NC_001847.1 | + | 30415 | 0.72 | 0.20116 |
Target: 5'- -gCCGCCGGCaaGCuCGUGGCGGGcgcGGAGg -3' miRNA: 3'- ggGGCGGCCGg-CG-GCGCCGCUC---UCUC- -5' |
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6689 | 3' | -66.3 | NC_001847.1 | + | 102255 | 0.72 | 0.187637 |
Target: 5'- uCCCCGCCGGCCcccgaggccucGCCGuCGGCcgccguGAGGu -3' miRNA: 3'- -GGGGCGGCCGG-----------CGGC-GCCGcu----CUCUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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