miRNA display CGI


Results 81 - 100 of 487 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6689 3' -66.3 NC_001847.1 + 102255 0.72 0.187637
Target:  5'- uCCCCGCCGGCCcccgaggccucGCCGuCGGCcgccguGAGGu -3'
miRNA:   3'- -GGGGCGGCCGG-----------CGGC-GCCGcu----CUCUc -5'
6689 3' -66.3 NC_001847.1 + 57214 0.71 0.236031
Target:  5'- aCgCC-CCGGCCGCCGgGGCucgucgccGAGAGGu -3'
miRNA:   3'- -GgGGcGGCCGGCGGCgCCG--------CUCUCUc -5'
6689 3' -66.3 NC_001847.1 + 24381 0.71 0.22
Target:  5'- aCCCGCauggcgcgaacucCGGCgCGgCGCGcGCGGGAGGGu -3'
miRNA:   3'- gGGGCG-------------GCCG-GCgGCGC-CGCUCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 120133 0.71 0.220502
Target:  5'- gCUCGCgCGGCCccaCCGCGGCcGAGGGGc -3'
miRNA:   3'- gGGGCG-GCCGGc--GGCGCCG-CUCUCUc -5'
6689 3' -66.3 NC_001847.1 + 72659 0.71 0.225067
Target:  5'- aCCCCG-CGGCCGcCCGCcGGCGAccccggcccugcuGAGGc -3'
miRNA:   3'- -GGGGCgGCCGGC-GGCG-CCGCU-------------CUCUc -5'
6689 3' -66.3 NC_001847.1 + 102980 0.71 0.225579
Target:  5'- gCUCCGCCGcgcacGCCGUCGCGGCGuGcgcGGGc -3'
miRNA:   3'- -GGGGCGGC-----CGGCGGCGCCGCuCu--CUC- -5'
6689 3' -66.3 NC_001847.1 + 76022 0.71 0.225579
Target:  5'- aCCCGCgCGGCCGgaGCGGCGGcggcgacgacGAcGAGg -3'
miRNA:   3'- gGGGCG-GCCGGCggCGCCGCU----------CU-CUC- -5'
6689 3' -66.3 NC_001847.1 + 89625 0.71 0.230756
Target:  5'- gCCCCGuCCGcGCCGCCcgGCGGCGGc---- -3'
miRNA:   3'- -GGGGC-GGC-CGGCGG--CGCCGCUcucuc -5'
6689 3' -66.3 NC_001847.1 + 32300 0.71 0.230756
Target:  5'- gCCCCGCgacGCCGCCGCGGaaCGGGAc-- -3'
miRNA:   3'- -GGGGCGgc-CGGCGGCGCC--GCUCUcuc -5'
6689 3' -66.3 NC_001847.1 + 71725 0.71 0.236031
Target:  5'- gCCCGCCGG-CGCCGCGugcgcucccguGCGAGGc-- -3'
miRNA:   3'- gGGGCGGCCgGCGGCGC-----------CGCUCUcuc -5'
6689 3' -66.3 NC_001847.1 + 78249 0.71 0.241408
Target:  5'- gCCCGCCGGCguCGCCGUcgccGGCGGGc--- -3'
miRNA:   3'- gGGGCGGCCG--GCGGCG----CCGCUCucuc -5'
6689 3' -66.3 NC_001847.1 + 13975 0.71 0.236031
Target:  5'- gCCCGCCccuGGCCGgCaaGCGGCGGGucauGGAGc -3'
miRNA:   3'- gGGGCGG---CCGGCgG--CGCCGCUC----UCUC- -5'
6689 3' -66.3 NC_001847.1 + 92421 0.71 0.230233
Target:  5'- gCCCGCgCGGCCGcCCGCcgcgccaaauccgGGCuGGGAGGu -3'
miRNA:   3'- gGGGCG-GCCGGC-GGCG-------------CCG-CUCUCUc -5'
6689 3' -66.3 NC_001847.1 + 8066 0.71 0.229712
Target:  5'- gCCCGCgCGcagaggggggcaCCGCCGCGGCGAGAu-- -3'
miRNA:   3'- gGGGCG-GCc-----------GGCGGCGCCGCUCUcuc -5'
6689 3' -66.3 NC_001847.1 + 127194 0.71 0.22
Target:  5'- aCCCGCauggcgcgaacucCGGCgCGgCGCGcGCGGGAGGGu -3'
miRNA:   3'- gGGGCG-------------GCCG-GCgGCGC-CGCUCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 29573 0.71 0.241408
Target:  5'- gCCgUGCCGGCUGCCGUcuuGCGAGAc-- -3'
miRNA:   3'- -GGgGCGGCCGGCGGCGc--CGCUCUcuc -5'
6689 3' -66.3 NC_001847.1 + 118748 0.71 0.215523
Target:  5'- gCCCCGCgCGGCUG-CGCGaGCGGGcGAa -3'
miRNA:   3'- -GGGGCG-GCCGGCgGCGC-CGCUCuCUc -5'
6689 3' -66.3 NC_001847.1 + 103899 0.71 0.21064
Target:  5'- gUCCaCGCCGGgCGCCGCGGcCGcGGGcGg -3'
miRNA:   3'- -GGG-GCGGCCgGCGGCGCC-GCuCUCuC- -5'
6689 3' -66.3 NC_001847.1 + 124552 0.71 0.236031
Target:  5'- gCCggCGCCGGCC-CgCGCGcGCGGGGGGGc -3'
miRNA:   3'- gGG--GCGGCCGGcG-GCGC-CGCUCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 73703 0.71 0.230756
Target:  5'- gCCUCGCCGcGCCcggcggcgcgGCCGCGgGCGucGAGGGc -3'
miRNA:   3'- -GGGGCGGC-CGG----------CGGCGC-CGCu-CUCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.