miRNA display CGI


Results 101 - 120 of 487 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6689 3' -66.3 NC_001847.1 + 8066 0.71 0.229712
Target:  5'- gCCCGCgCGcagaggggggcaCCGCCGCGGCGAGAu-- -3'
miRNA:   3'- gGGGCG-GCc-----------GGCGGCGCCGCUCUcuc -5'
6689 3' -66.3 NC_001847.1 + 127194 0.71 0.22
Target:  5'- aCCCGCauggcgcgaacucCGGCgCGgCGCGcGCGGGAGGGu -3'
miRNA:   3'- gGGGCG-------------GCCG-GCgGCGC-CGCUCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 105911 0.71 0.215523
Target:  5'- gCCgCgGCCGGCaggccgcggccCGCCGCGGCcGAGAGc- -3'
miRNA:   3'- -GG-GgCGGCCG-----------GCGGCGCCG-CUCUCuc -5'
6689 3' -66.3 NC_001847.1 + 16044 0.71 0.21503
Target:  5'- gCCCCGCCgccccgcGGCgGCCGCGGCGccucugcuGGGc -3'
miRNA:   3'- -GGGGCGG-------CCGgCGGCGCCGCucu-----CUC- -5'
6689 3' -66.3 NC_001847.1 + 96177 0.71 0.21064
Target:  5'- gCCCCGCCgcGGCCGCCGCcauGGCGc----- -3'
miRNA:   3'- -GGGGCGG--CCGGCGGCG---CCGCucucuc -5'
6689 3' -66.3 NC_001847.1 + 56890 0.71 0.21064
Target:  5'- gCCCGCCGGCgacggcgaCGCCgGCGgGCGGGuGAc -3'
miRNA:   3'- gGGGCGGCCG--------GCGG-CGC-CGCUCuCUc -5'
6689 3' -66.3 NC_001847.1 + 124552 0.71 0.236031
Target:  5'- gCCggCGCCGGCC-CgCGCGcGCGGGGGGGc -3'
miRNA:   3'- gGG--GCGGCCGGcG-GCGC-CGCUCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 29573 0.71 0.241408
Target:  5'- gCCgUGCCGGCUGCCGUcuuGCGAGAc-- -3'
miRNA:   3'- -GGgGCGGCCGGCGGCGc--CGCUCUcuc -5'
6689 3' -66.3 NC_001847.1 + 103899 0.71 0.21064
Target:  5'- gUCCaCGCCGGgCGCCGCGGcCGcGGGcGg -3'
miRNA:   3'- -GGG-GCGGCCgGCGGCGCC-GCuCUCuC- -5'
6689 3' -66.3 NC_001847.1 + 21739 0.71 0.236031
Target:  5'- gCCggCGCCGGCC-CgCGCGcGCGGGGGGGc -3'
miRNA:   3'- gGG--GCGGCCGGcG-GCGC-CGCUCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 57214 0.71 0.236031
Target:  5'- aCgCC-CCGGCCGCCGgGGCucgucgccGAGAGGu -3'
miRNA:   3'- -GgGGcGGCCGGCGGCgCCG--------CUCUCUc -5'
6689 3' -66.3 NC_001847.1 + 78249 0.71 0.241408
Target:  5'- gCCCGCCGGCguCGCCGUcgccGGCGGGc--- -3'
miRNA:   3'- gGGGCGGCCG--GCGGCG----CCGCUCucuc -5'
6689 3' -66.3 NC_001847.1 + 118748 0.71 0.215523
Target:  5'- gCCCCGCgCGGCUG-CGCGaGCGGGcGAa -3'
miRNA:   3'- -GGGGCG-GCCGGCgGCGC-CGCUCuCUc -5'
6689 3' -66.3 NC_001847.1 + 79618 0.7 0.246334
Target:  5'- -gUCGCCGGUCGCCccGCGGCGGGcgccgccagcagcAGGGc -3'
miRNA:   3'- ggGGCGGCCGGCGG--CGCCGCUC-------------UCUC- -5'
6689 3' -66.3 NC_001847.1 + 131875 0.7 0.252467
Target:  5'- gCUCGCCGGCCG-CGCGGCGccGGc- -3'
miRNA:   3'- gGGGCGGCCGGCgGCGCCGCucUCuc -5'
6689 3' -66.3 NC_001847.1 + 54088 0.7 0.256435
Target:  5'- cCUUCGCCGGCaaccuagaggcgcuCGCCGCG-CGGGAGGc -3'
miRNA:   3'- -GGGGCGGCCG--------------GCGGCGCcGCUCUCUc -5'
6689 3' -66.3 NC_001847.1 + 10370 0.7 0.252467
Target:  5'- uCCCUGCuCGggucGCCGCuCGCGGCGGGGc-- -3'
miRNA:   3'- -GGGGCG-GC----CGGCG-GCGCCGCUCUcuc -5'
6689 3' -66.3 NC_001847.1 + 131247 0.7 0.252467
Target:  5'- gCCCgCGCUGGCuaCGCCGCGGCGccgcgcGAcGGGc -3'
miRNA:   3'- -GGG-GCGGCCG--GCGGCGCCGCu-----CU-CUC- -5'
6689 3' -66.3 NC_001847.1 + 38844 0.7 0.252467
Target:  5'- gCCCCGCCauuGCCGCCGcCGGCcccGAGu- -3'
miRNA:   3'- -GGGGCGGc--CGGCGGC-GCCGcu-CUCuc -5'
6689 3' -66.3 NC_001847.1 + 120991 0.7 0.246886
Target:  5'- gCCgCC-CCGGCCGCCGCuGCGcagccggccGGAGAc -3'
miRNA:   3'- -GG-GGcGGCCGGCGGCGcCGC---------UCUCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.