miRNA display CGI


Results 121 - 140 of 487 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6689 3' -66.3 NC_001847.1 + 4841 0.7 0.246886
Target:  5'- gUCgGCCGGCCGUcaaaaCGCaGGgGAGGGGGg -3'
miRNA:   3'- gGGgCGGCCGGCG-----GCG-CCgCUCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 79618 0.7 0.246334
Target:  5'- -gUCGCCGGUCGCCccGCGGCGGGcgccgccagcagcAGGGc -3'
miRNA:   3'- ggGGCGGCCGGCGG--CGCCGCUC-------------UCUC- -5'
6689 3' -66.3 NC_001847.1 + 3239 0.7 0.275832
Target:  5'- gCCCgCGCCGuGCuCGCCgGCGGC-AGGGGc -3'
miRNA:   3'- -GGG-GCGGC-CG-GCGG-CGCCGcUCUCUc -5'
6689 3' -66.3 NC_001847.1 + 107844 0.7 0.275832
Target:  5'- gCCCGCCGGCacCGCCGUccucucgcccGGCGGGcAGc- -3'
miRNA:   3'- gGGGCGGCCG--GCGGCG----------CCGCUC-UCuc -5'
6689 3' -66.3 NC_001847.1 + 107654 0.7 0.246886
Target:  5'- gUCgGCCGGCCGUcaaaaCGCaGGgGAGGGGGg -3'
miRNA:   3'- gGGgCGGCCGGCG-----GCG-CCgCUCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 120991 0.7 0.246886
Target:  5'- gCCgCC-CCGGCCGCCGCuGCGcagccggccGGAGAc -3'
miRNA:   3'- -GG-GGcGGCCGGCGGCGcCGC---------UCUCUc -5'
6689 3' -66.3 NC_001847.1 + 38844 0.7 0.252467
Target:  5'- gCCCCGCCauuGCCGCCGcCGGCcccGAGu- -3'
miRNA:   3'- -GGGGCGGc--CGGCGGC-GCCGcu-CUCuc -5'
6689 3' -66.3 NC_001847.1 + 131247 0.7 0.252467
Target:  5'- gCCCgCGCUGGCuaCGCCGCGGCGccgcgcGAcGGGc -3'
miRNA:   3'- -GGG-GCGGCCG--GCGGCGCCGCu-----CU-CUC- -5'
6689 3' -66.3 NC_001847.1 + 131875 0.7 0.252467
Target:  5'- gCUCGCCGGCCG-CGCGGCGccGGc- -3'
miRNA:   3'- gGGGCGGCCGGCgGCGCCGCucUCuc -5'
6689 3' -66.3 NC_001847.1 + 10370 0.7 0.252467
Target:  5'- uCCCUGCuCGggucGCCGCuCGCGGCGGGGc-- -3'
miRNA:   3'- -GGGGCG-GC----CGGCG-GCGCCGCUCUcuc -5'
6689 3' -66.3 NC_001847.1 + 54088 0.7 0.256435
Target:  5'- cCUUCGCCGGCaaccuagaggcgcuCGCCGCG-CGGGAGGc -3'
miRNA:   3'- -GGGGCGGCCG--------------GCGGCGCcGCUCUCUc -5'
6689 3' -66.3 NC_001847.1 + 8624 0.7 0.258151
Target:  5'- gCCCCGCCgggggagcGGCCGCUGCGGacuCGGGcgcccAGAc -3'
miRNA:   3'- -GGGGCGG--------CCGGCGGCGCC---GCUC-----UCUc -5'
6689 3' -66.3 NC_001847.1 + 115744 0.7 0.269833
Target:  5'- gCCUGCUGcGUCGCCGCGGagcCGAcgGGGAGc -3'
miRNA:   3'- gGGGCGGC-CGGCGGCGCC---GCU--CUCUC- -5'
6689 3' -66.3 NC_001847.1 + 101020 0.7 0.269833
Target:  5'- -aCUGCC-GCCGCCGCGGCcGGGGu- -3'
miRNA:   3'- ggGGCGGcCGGCGGCGCCGcUCUCuc -5'
6689 3' -66.3 NC_001847.1 + 122544 0.7 0.269833
Target:  5'- aCCCUGCCGGUCgcugGCCGCacgaguGCGAGGGc- -3'
miRNA:   3'- -GGGGCGGCCGG----CGGCGc-----CGCUCUCuc -5'
6689 3' -66.3 NC_001847.1 + 31795 0.7 0.275832
Target:  5'- gCCUGCCuuacGGCCGUgGCGGUGGGcggcgcGGGGg -3'
miRNA:   3'- gGGGCGG----CCGGCGgCGCCGCUC------UCUC- -5'
6689 3' -66.3 NC_001847.1 + 106052 0.7 0.275832
Target:  5'- gCCCgCGCCGuGCuCGCCgGCGGC-AGGGGc -3'
miRNA:   3'- -GGG-GCGGC-CG-GCGG-CGCCGcUCUCUc -5'
6689 3' -66.3 NC_001847.1 + 135001 0.7 0.26394
Target:  5'- gCCCC-CCGGCCGgggcccgaggcCCGCGGgCGGGGccGGGg -3'
miRNA:   3'- -GGGGcGGCCGGC-----------GGCGCC-GCUCU--CUC- -5'
6689 3' -66.3 NC_001847.1 + 100867 0.7 0.27222
Target:  5'- gCCCGCCgggggucggcggcagGGgCGCgGcCGGCGGGAGAc -3'
miRNA:   3'- gGGGCGG---------------CCgGCGgC-GCCGCUCUCUc -5'
6689 3' -66.3 NC_001847.1 + 28434 0.7 0.252467
Target:  5'- gCCCgCGCUGGCuaCGCCGCGGCGccgcgcGAcGGGc -3'
miRNA:   3'- -GGG-GCGGCCG--GCGGCGCCGCu-----CU-CUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.