miRNA display CGI


Results 61 - 80 of 487 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6689 3' -66.3 NC_001847.1 + 125090 0.73 0.174921
Target:  5'- gCCCGCgCGGCCaagaugucguucGCgGCGGCGAGAa-- -3'
miRNA:   3'- gGGGCG-GCCGG------------CGgCGCCGCUCUcuc -5'
6689 3' -66.3 NC_001847.1 + 12332 0.73 0.174921
Target:  5'- gCCCGCCGGCuCGCUggugaGCGGUGGGccuggcucgGGAGc -3'
miRNA:   3'- gGGGCGGCCG-GCGG-----CGCCGCUC---------UCUC- -5'
6689 3' -66.3 NC_001847.1 + 51966 0.73 0.174921
Target:  5'- cCCCCGCCGuCCGCCaGCccgucgGGCGuuGGGAGg -3'
miRNA:   3'- -GGGGCGGCcGGCGG-CG------CCGCu-CUCUC- -5'
6689 3' -66.3 NC_001847.1 + 97700 0.72 0.18331
Target:  5'- gCCCGCUGcugcgcucGCCGUCGuCGGCGGGGGcAGa -3'
miRNA:   3'- gGGGCGGC--------CGGCGGC-GCCGCUCUC-UC- -5'
6689 3' -66.3 NC_001847.1 + 33233 0.72 0.18331
Target:  5'- gCCgCGCCGGgCGCCGCGGCGc----- -3'
miRNA:   3'- -GGgGCGGCCgGCGGCGCCGCucucuc -5'
6689 3' -66.3 NC_001847.1 + 73200 0.72 0.18331
Target:  5'- gCCCgCGCgGGCCGCgccgccgcugaCGCGGagGAGGGGGg -3'
miRNA:   3'- -GGG-GCGgCCGGCG-----------GCGCCg-CUCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 125051 0.72 0.187637
Target:  5'- uCCCCGCCGcuugugcucCCGCgCGCGGCGGGGc-- -3'
miRNA:   3'- -GGGGCGGCc--------GGCG-GCGCCGCUCUcuc -5'
6689 3' -66.3 NC_001847.1 + 41621 0.72 0.187637
Target:  5'- gCUCCGCCgugauGGCCGCgaGCGGCGcgccGGGGGGc -3'
miRNA:   3'- -GGGGCGG-----CCGGCGg-CGCCGC----UCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 88229 0.72 0.187637
Target:  5'- gCCUCGCCggagccgaGGCCGgCGCGGCGcGGGGc -3'
miRNA:   3'- -GGGGCGG--------CCGGCgGCGCCGCuCUCUc -5'
6689 3' -66.3 NC_001847.1 + 35943 0.72 0.187637
Target:  5'- gCCgCCGCgCGGCCGCCuCGcGCGAGGaccacGAGg -3'
miRNA:   3'- -GG-GGCG-GCCGGCGGcGC-CGCUCU-----CUC- -5'
6689 3' -66.3 NC_001847.1 + 102255 0.72 0.187637
Target:  5'- uCCCCGCCGGCCcccgaggccucGCCGuCGGCcgccguGAGGu -3'
miRNA:   3'- -GGGGCGGCCGG-----------CGGC-GCCGcu----CUCUc -5'
6689 3' -66.3 NC_001847.1 + 39798 0.72 0.196561
Target:  5'- cCCCCGCCaGUCGaccgcgucguCCGCGGCGGGcccGAGc -3'
miRNA:   3'- -GGGGCGGcCGGC----------GGCGCCGCUCu--CUC- -5'
6689 3' -66.3 NC_001847.1 + 59374 0.72 0.196561
Target:  5'- gCCCG-CGGCCGUguucacccgCGCGGCGGGcGAGc -3'
miRNA:   3'- gGGGCgGCCGGCG---------GCGCCGCUCuCUC- -5'
6689 3' -66.3 NC_001847.1 + 134089 0.72 0.200696
Target:  5'- gCCCGgC-GCCGCCGCuugcucuGGCGAGcAGAGg -3'
miRNA:   3'- gGGGCgGcCGGCGGCG-------CCGCUC-UCUC- -5'
6689 3' -66.3 NC_001847.1 + 30415 0.72 0.20116
Target:  5'- -gCCGCCGGCaaGCuCGUGGCGGGcgcGGAGg -3'
miRNA:   3'- ggGGCGGCCGg-CG-GCGCCGCUC---UCUC- -5'
6689 3' -66.3 NC_001847.1 + 88291 0.72 0.20538
Target:  5'- gCCUGCUgGGCCGacgcggcUCGCGGCGAG-GAGg -3'
miRNA:   3'- gGGGCGG-CCGGC-------GGCGCCGCUCuCUC- -5'
6689 3' -66.3 NC_001847.1 + 61434 0.72 0.205853
Target:  5'- gCCCG-CGGCCGCgccgccgggCGCGGCGAGGcGGu -3'
miRNA:   3'- gGGGCgGCCGGCG---------GCGCCGCUCUcUC- -5'
6689 3' -66.3 NC_001847.1 + 14143 0.72 0.205853
Target:  5'- cUCCgGCCGGCUGCgcaGCGGCGGccGGGg -3'
miRNA:   3'- -GGGgCGGCCGGCGg--CGCCGCUcuCUC- -5'
6689 3' -66.3 NC_001847.1 + 76915 0.72 0.205853
Target:  5'- gCgCCGCCGcuGCCGCC-CGGCGGGcAGAu -3'
miRNA:   3'- -GgGGCGGC--CGGCGGcGCCGCUC-UCUc -5'
6689 3' -66.3 NC_001847.1 + 134267 0.72 0.205853
Target:  5'- gCCCCggcGCgGGCCGCCGCcGCGcguGGAGGu -3'
miRNA:   3'- -GGGG---CGgCCGGCGGCGcCGC---UCUCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.