miRNA display CGI


Results 101 - 120 of 487 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6689 3' -66.3 NC_001847.1 + 92421 0.71 0.230233
Target:  5'- gCCCGCgCGGCCGcCCGCcgcgccaaauccgGGCuGGGAGGu -3'
miRNA:   3'- gGGGCG-GCCGGC-GGCG-------------CCG-CUCUCUc -5'
6689 3' -66.3 NC_001847.1 + 32300 0.71 0.230756
Target:  5'- gCCCCGCgacGCCGCCGCGGaaCGGGAc-- -3'
miRNA:   3'- -GGGGCGgc-CGGCGGCGCC--GCUCUcuc -5'
6689 3' -66.3 NC_001847.1 + 89625 0.71 0.230756
Target:  5'- gCCCCGuCCGcGCCGCCcgGCGGCGGc---- -3'
miRNA:   3'- -GGGGC-GGC-CGGCGG--CGCCGCUcucuc -5'
6689 3' -66.3 NC_001847.1 + 73703 0.71 0.230756
Target:  5'- gCCUCGCCGcGCCcggcggcgcgGCCGCGgGCGucGAGGGc -3'
miRNA:   3'- -GGGGCGGC-CGG----------CGGCGC-CGCu-CUCUC- -5'
6689 3' -66.3 NC_001847.1 + 122004 0.71 0.230756
Target:  5'- -aCCGCCGGCCGCgGCaGGCGGc---- -3'
miRNA:   3'- ggGGCGGCCGGCGgCG-CCGCUcucuc -5'
6689 3' -66.3 NC_001847.1 + 124552 0.71 0.236031
Target:  5'- gCCggCGCCGGCC-CgCGCGcGCGGGGGGGc -3'
miRNA:   3'- gGG--GCGGCCGGcG-GCGC-CGCUCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 76403 0.71 0.236031
Target:  5'- --gCGCCGGggGCCGCGGCGGGGGc- -3'
miRNA:   3'- gggGCGGCCggCGGCGCCGCUCUCuc -5'
6689 3' -66.3 NC_001847.1 + 71725 0.71 0.236031
Target:  5'- gCCCGCCGG-CGCCGCGugcgcucccguGCGAGGc-- -3'
miRNA:   3'- gGGGCGGCCgGCGGCGC-----------CGCUCUcuc -5'
6689 3' -66.3 NC_001847.1 + 13975 0.71 0.236031
Target:  5'- gCCCGCCccuGGCCGgCaaGCGGCGGGucauGGAGc -3'
miRNA:   3'- gGGGCGG---CCGGCgG--CGCCGCUC----UCUC- -5'
6689 3' -66.3 NC_001847.1 + 21739 0.71 0.236031
Target:  5'- gCCggCGCCGGCC-CgCGCGcGCGGGGGGGc -3'
miRNA:   3'- gGG--GCGGCCGGcG-GCGC-CGCUCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 57214 0.71 0.236031
Target:  5'- aCgCC-CCGGCCGCCGgGGCucgucgccGAGAGGu -3'
miRNA:   3'- -GgGGcGGCCGGCGGCgCCG--------CUCUCUc -5'
6689 3' -66.3 NC_001847.1 + 29573 0.71 0.241408
Target:  5'- gCCgUGCCGGCUGCCGUcuuGCGAGAc-- -3'
miRNA:   3'- -GGgGCGGCCGGCGGCGc--CGCUCUcuc -5'
6689 3' -66.3 NC_001847.1 + 78249 0.71 0.241408
Target:  5'- gCCCGCCGGCguCGCCGUcgccGGCGGGc--- -3'
miRNA:   3'- gGGGCGGCCG--GCGGCG----CCGCUCucuc -5'
6689 3' -66.3 NC_001847.1 + 79618 0.7 0.246334
Target:  5'- -gUCGCCGGUCGCCccGCGGCGGGcgccgccagcagcAGGGc -3'
miRNA:   3'- ggGGCGGCCGGCGG--CGCCGCUC-------------UCUC- -5'
6689 3' -66.3 NC_001847.1 + 120991 0.7 0.246886
Target:  5'- gCCgCC-CCGGCCGCCGCuGCGcagccggccGGAGAc -3'
miRNA:   3'- -GG-GGcGGCCGGCGGCGcCGC---------UCUCUc -5'
6689 3' -66.3 NC_001847.1 + 4841 0.7 0.246886
Target:  5'- gUCgGCCGGCCGUcaaaaCGCaGGgGAGGGGGg -3'
miRNA:   3'- gGGgCGGCCGGCG-----GCG-CCgCUCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 107654 0.7 0.246886
Target:  5'- gUCgGCCGGCCGUcaaaaCGCaGGgGAGGGGGg -3'
miRNA:   3'- gGGgCGGCCGGCG-----GCG-CCgCUCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 68062 0.7 0.246886
Target:  5'- gCCUCG-CGGCgCGCCuGCGGCGGGGcGAa -3'
miRNA:   3'- -GGGGCgGCCG-GCGG-CGCCGCUCU-CUc -5'
6689 3' -66.3 NC_001847.1 + 113688 0.7 0.251904
Target:  5'- uCgUCGUCGGCUGCCGCGuccgcguGCGGGAcGGGg -3'
miRNA:   3'- -GgGGCGGCCGGCGGCGC-------CGCUCU-CUC- -5'
6689 3' -66.3 NC_001847.1 + 10370 0.7 0.252467
Target:  5'- uCCCUGCuCGggucGCCGCuCGCGGCGGGGc-- -3'
miRNA:   3'- -GGGGCG-GC----CGGCG-GCGCCGCUCUcuc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.