miRNA display CGI


Results 121 - 140 of 487 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6689 3' -66.3 NC_001847.1 + 10370 0.7 0.252467
Target:  5'- uCCCUGCuCGggucGCCGCuCGCGGCGGGGc-- -3'
miRNA:   3'- -GGGGCG-GC----CGGCG-GCGCCGCUCUcuc -5'
6689 3' -66.3 NC_001847.1 + 131875 0.7 0.252467
Target:  5'- gCUCGCCGGCCG-CGCGGCGccGGc- -3'
miRNA:   3'- gGGGCGGCCGGCgGCGCCGCucUCuc -5'
6689 3' -66.3 NC_001847.1 + 28434 0.7 0.252467
Target:  5'- gCCCgCGCUGGCuaCGCCGCGGCGccgcgcGAcGGGc -3'
miRNA:   3'- -GGG-GCGGCCG--GCGGCGCCGCu-----CU-CUC- -5'
6689 3' -66.3 NC_001847.1 + 131247 0.7 0.252467
Target:  5'- gCCCgCGCUGGCuaCGCCGCGGCGccgcgcGAcGGGc -3'
miRNA:   3'- -GGG-GCGGCCG--GCGGCGCCGCu-----CU-CUC- -5'
6689 3' -66.3 NC_001847.1 + 38844 0.7 0.252467
Target:  5'- gCCCCGCCauuGCCGCCGcCGGCcccGAGu- -3'
miRNA:   3'- -GGGGCGGc--CGGCGGC-GCCGcu-CUCuc -5'
6689 3' -66.3 NC_001847.1 + 54088 0.7 0.256435
Target:  5'- cCUUCGCCGGCaaccuagaggcgcuCGCCGCG-CGGGAGGc -3'
miRNA:   3'- -GGGGCGGCCG--------------GCGGCGCcGCUCUCUc -5'
6689 3' -66.3 NC_001847.1 + 8624 0.7 0.258151
Target:  5'- gCCCCGCCgggggagcGGCCGCUGCGGacuCGGGcgcccAGAc -3'
miRNA:   3'- -GGGGCGG--------CCGGCGGCGCC---GCUC-----UCUc -5'
6689 3' -66.3 NC_001847.1 + 132886 0.7 0.258151
Target:  5'- uUCCCGagGGCCGCCGCGucaccUGGGAGAc -3'
miRNA:   3'- -GGGGCggCCGGCGGCGCc----GCUCUCUc -5'
6689 3' -66.3 NC_001847.1 + 99911 0.7 0.258151
Target:  5'- gCCCGCCGGCCGCCugcagcacguccGCGcGC-AGGGc- -3'
miRNA:   3'- gGGGCGGCCGGCGG------------CGC-CGcUCUCuc -5'
6689 3' -66.3 NC_001847.1 + 33834 0.7 0.258151
Target:  5'- ---aGCgGGCUugggaGUCGCGGCGGGAGAGa -3'
miRNA:   3'- ggggCGgCCGG-----CGGCGCCGCUCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 38966 0.7 0.26394
Target:  5'- gCCaUGgCGGCgGCCGCGGCGGGGc-- -3'
miRNA:   3'- gGG-GCgGCCGgCGGCGCCGCUCUcuc -5'
6689 3' -66.3 NC_001847.1 + 31148 0.7 0.26394
Target:  5'- -gCUGCCGGCCGCgGCGGUGGc---- -3'
miRNA:   3'- ggGGCGGCCGGCGgCGCCGCUcucuc -5'
6689 3' -66.3 NC_001847.1 + 133961 0.7 0.26394
Target:  5'- -gCUGCCGGCCGCgGCGGUGGc---- -3'
miRNA:   3'- ggGGCGGCCGGCGgCGCCGCUcucuc -5'
6689 3' -66.3 NC_001847.1 + 39833 0.7 0.26394
Target:  5'- gCCCUGCCGG-CGCCGCGcCuGGAGGc -3'
miRNA:   3'- -GGGGCGGCCgGCGGCGCcGcUCUCUc -5'
6689 3' -66.3 NC_001847.1 + 135001 0.7 0.26394
Target:  5'- gCCCC-CCGGCCGgggcccgaggcCCGCGGgCGGGGccGGGg -3'
miRNA:   3'- -GGGGcGGCCGGC-----------GGCGCC-GCUCU--CUC- -5'
6689 3' -66.3 NC_001847.1 + 93512 0.7 0.26394
Target:  5'- cCCCCGgCGcGCCGCuCGCGGCcaucacggcgGAGcAGAa -3'
miRNA:   3'- -GGGGCgGC-CGGCG-GCGCCG----------CUC-UCUc -5'
6689 3' -66.3 NC_001847.1 + 32188 0.7 0.26394
Target:  5'- gCCCC-CCGGCCGgggcccgaggcCCGCGGgCGGGGccGGGg -3'
miRNA:   3'- -GGGGcGGCCGGC-----------GGCGCC-GCUCU--CUC- -5'
6689 3' -66.3 NC_001847.1 + 103141 0.7 0.269833
Target:  5'- -gCCGCCGGCgCGCgaagguccuCGCGGCucGAGGGc -3'
miRNA:   3'- ggGGCGGCCG-GCG---------GCGCCGcuCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 115744 0.7 0.269833
Target:  5'- gCCUGCUGcGUCGCCGCGGagcCGAcgGGGAGc -3'
miRNA:   3'- gGGGCGGC-CGGCGGCGCC---GCU--CUCUC- -5'
6689 3' -66.3 NC_001847.1 + 122544 0.7 0.269833
Target:  5'- aCCCUGCCGGUCgcugGCCGCacgaguGCGAGGGc- -3'
miRNA:   3'- -GGGGCGGCCGG----CGGCGc-----CGCUCUCuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.