miRNA display CGI


Results 101 - 120 of 487 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6689 3' -66.3 NC_001847.1 + 3356 0.66 0.42645
Target:  5'- aCgCUGCCGGCCGCCGCaauccGCGcgccGAGc -3'
miRNA:   3'- -GgGGCGGCCGGCGGCGc----CGCucu-CUC- -5'
6689 3' -66.3 NC_001847.1 + 105691 0.66 0.42645
Target:  5'- aCgCGCgGGCCGCCGCGccGCGcGucGAGu -3'
miRNA:   3'- gGgGCGgCCGGCGGCGC--CGCuCu-CUC- -5'
6689 3' -66.3 NC_001847.1 + 132389 0.66 0.42645
Target:  5'- gCCggCGCCGgcGCCGCCGCGcCGGGccGGGGg -3'
miRNA:   3'- gGG--GCGGC--CGGCGGCGCcGCUC--UCUC- -5'
6689 3' -66.3 NC_001847.1 + 101464 0.66 0.42645
Target:  5'- gCCgCCGCgCGGCCGCaaggGCGGCGcgcuagcGAccGAGg -3'
miRNA:   3'- -GG-GGCG-GCCGGCGg---CGCCGCu------CU--CUC- -5'
6689 3' -66.3 NC_001847.1 + 31865 0.66 0.42645
Target:  5'- gCUCGCCGGCguUGCUGCcGGCG-GAGc- -3'
miRNA:   3'- gGGGCGGCCG--GCGGCG-CCGCuCUCuc -5'
6689 3' -66.3 NC_001847.1 + 76637 0.66 0.42645
Target:  5'- uCCCUGCCcGUCGCCcugcccgaggGCGGgGAGGGc- -3'
miRNA:   3'- -GGGGCGGcCGGCGG----------CGCCgCUCUCuc -5'
6689 3' -66.3 NC_001847.1 + 36372 0.66 0.425624
Target:  5'- gCgCCGCCGcggcccgggcagcGCgCGCCGCGGCGAcGGuGc -3'
miRNA:   3'- -GgGGCGGC-------------CG-GCGGCGCCGCUcUCuC- -5'
6689 3' -66.3 NC_001847.1 + 83036 0.66 0.423977
Target:  5'- gCCCG-CGGCCgcuagugcgcuuggGCCGCGGCGcGGccgaAGAGc -3'
miRNA:   3'- gGGGCgGCCGG--------------CGGCGCCGC-UC----UCUC- -5'
6689 3' -66.3 NC_001847.1 + 134178 0.67 0.421513
Target:  5'- gCCCCGCCGGCCcggguGCCgGCGcagucguccccgggcGCGGGcucGGGc -3'
miRNA:   3'- -GGGGCGGCCGG-----CGG-CGC---------------CGCUCu--CUC- -5'
6689 3' -66.3 NC_001847.1 + 31365 0.67 0.421513
Target:  5'- gCCCCGCCGGCCcggguGCCgGCGcagucguccccgggcGCGGGcucGGGc -3'
miRNA:   3'- -GGGGCGGCCGG-----CGG-CGC---------------CGCUCu--CUC- -5'
6689 3' -66.3 NC_001847.1 + 47314 0.67 0.418241
Target:  5'- gCCCGCCGGCgugaUGuuGCaGCGGGcGAu -3'
miRNA:   3'- gGGGCGGCCG----GCggCGcCGCUCuCUc -5'
6689 3' -66.3 NC_001847.1 + 116969 0.67 0.418241
Target:  5'- gUCCGCCaugGGcCCGCUGgGGCGAGcGuGg -3'
miRNA:   3'- gGGGCGG---CC-GGCGGCgCCGCUCuCuC- -5'
6689 3' -66.3 NC_001847.1 + 98793 0.67 0.418241
Target:  5'- gCgCCGCgUGGCgCGCCGCGGCGcgcGGcacGAGc -3'
miRNA:   3'- -GgGGCG-GCCG-GCGGCGCCGC---UCu--CUC- -5'
6689 3' -66.3 NC_001847.1 + 35302 0.67 0.418241
Target:  5'- gCCCCGCCGaGCgGCgCGCGcuggaaGCGGGcgugcgccuGGAGc -3'
miRNA:   3'- -GGGGCGGC-CGgCG-GCGC------CGCUC---------UCUC- -5'
6689 3' -66.3 NC_001847.1 + 67523 0.67 0.418241
Target:  5'- uCUCCGCCGG-CGCCGCcuuuuuccgcaGGCGcGGGcGg -3'
miRNA:   3'- -GGGGCGGCCgGCGGCG-----------CCGCuCUCuC- -5'
6689 3' -66.3 NC_001847.1 + 27261 0.67 0.418241
Target:  5'- aCCUgccgcgagaGCCGGaugugaggcugcCCGCCG-GGCGAGAGGa -3'
miRNA:   3'- gGGG---------CGGCC------------GGCGGCgCCGCUCUCUc -5'
6689 3' -66.3 NC_001847.1 + 70784 0.67 0.418241
Target:  5'- gUCUGgCGGCuCGCuuCGCGGCGGGgccgGGAGg -3'
miRNA:   3'- gGGGCgGCCG-GCG--GCGCCGCUC----UCUC- -5'
6689 3' -66.3 NC_001847.1 + 53577 0.67 0.417425
Target:  5'- -gCCGCCGGCC-CCGCGcagcugcGCGGGGccggcGAGc -3'
miRNA:   3'- ggGGCGGCCGGcGGCGC-------CGCUCU-----CUC- -5'
6689 3' -66.3 NC_001847.1 + 135122 0.67 0.417425
Target:  5'- aCCCCcCCGGggucgcagggggcCCGCgcggCGCGGCGcGGAGGG -3'
miRNA:   3'- -GGGGcGGCC-------------GGCG----GCGCCGC-UCUCUC -5'
6689 3' -66.3 NC_001847.1 + 102817 0.67 0.415797
Target:  5'- uCCgCGCCGcGCCG-CGCGGgcccccugcgacccCGGGGGGGu -3'
miRNA:   3'- -GGgGCGGC-CGGCgGCGCC--------------GCUCUCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.