miRNA display CGI


Results 121 - 140 of 487 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6689 3' -66.3 NC_001847.1 + 4 0.67 0.415797
Target:  5'- uCCgCGCCGcGCCG-CGCGGgcccccugcgacccCGGGGGGGu -3'
miRNA:   3'- -GGgGCGGC-CGGCgGCGCC--------------GCUCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 51892 0.67 0.415797
Target:  5'- gCCCCGCCGcgcuuucggccgccGCCccgGCCGCGGCGu----- -3'
miRNA:   3'- -GGGGCGGC--------------CGG---CGGCGCCGCucucuc -5'
6689 3' -66.3 NC_001847.1 + 48832 0.67 0.413362
Target:  5'- gCCuuGCCgcgcgggggcgccucGGCCG-CGCGGCGcGAGGu -3'
miRNA:   3'- -GGggCGG---------------CCGGCgGCGCCGCuCUCUc -5'
6689 3' -66.3 NC_001847.1 + 97067 0.67 0.412552
Target:  5'- uCCCCGaccgcggCGGCCgccgcgcgcagcuuaGCCGCGGCGGcgcgguuggccgcGAGAa -3'
miRNA:   3'- -GGGGCg------GCCGG---------------CGGCGCCGCU-------------CUCUc -5'
6689 3' -66.3 NC_001847.1 + 32779 0.67 0.410129
Target:  5'- -aCgGCCGGCCGCUGgaCGcGCGAGuccGAGc -3'
miRNA:   3'- ggGgCGGCCGGCGGC--GC-CGCUCu--CUC- -5'
6689 3' -66.3 NC_001847.1 + 65265 0.67 0.410129
Target:  5'- gCCCgCgGCCGGuCCGCaGCGGCGGGc--- -3'
miRNA:   3'- -GGG-G-CGGCC-GGCGgCGCCGCUCucuc -5'
6689 3' -66.3 NC_001847.1 + 68935 0.67 0.410129
Target:  5'- gCCCgaGCC-GCCGCUggGCGGCGccgaugcggaAGAGGGg -3'
miRNA:   3'- -GGGg-CGGcCGGCGG--CGCCGC----------UCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 69081 0.67 0.410129
Target:  5'- gCUCGCCGcgucuggcGCCGCgCGCGGaCGGGcGGGc -3'
miRNA:   3'- gGGGCGGC--------CGGCG-GCGCC-GCUCuCUC- -5'
6689 3' -66.3 NC_001847.1 + 34987 0.67 0.410129
Target:  5'- cCCCCGCgcuguCGGCCcucuucccgGCCGCGGaCGuGGGc- -3'
miRNA:   3'- -GGGGCG-----GCCGG---------CGGCGCC-GCuCUCuc -5'
6689 3' -66.3 NC_001847.1 + 36993 0.67 0.410129
Target:  5'- gCCCgCGCCGaGCgGCgGCGGCGcGcucGAGc -3'
miRNA:   3'- -GGG-GCGGC-CGgCGgCGCCGCuCu--CUC- -5'
6689 3' -66.3 NC_001847.1 + 54045 0.67 0.410129
Target:  5'- uCCUCGUCGG-CG-CGCGGCGAGGc-- -3'
miRNA:   3'- -GGGGCGGCCgGCgGCGCCGCUCUcuc -5'
6689 3' -66.3 NC_001847.1 + 21945 0.67 0.410129
Target:  5'- -aCCG-CGGCuCGCgGCGGCaccGGGGGGGg -3'
miRNA:   3'- ggGGCgGCCG-GCGgCGCCG---CUCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 109164 0.67 0.410129
Target:  5'- gCCagaGCCGGCCGCgCGCuuguucccaaGGCGucGGGGc -3'
miRNA:   3'- gGGg--CGGCCGGCG-GCG----------CCGCucUCUC- -5'
6689 3' -66.3 NC_001847.1 + 36308 0.67 0.410129
Target:  5'- gCgCCGCUGccaCCGCCGCcGCGAGGGuGc -3'
miRNA:   3'- -GgGGCGGCc--GGCGGCGcCGCUCUCuC- -5'
6689 3' -66.3 NC_001847.1 + 30405 0.67 0.410129
Target:  5'- gCCCGagUGGCCGCCGCGccGCGGcGGGc -3'
miRNA:   3'- gGGGCg-GCCGGCGGCGC--CGCUcUCUc -5'
6689 3' -66.3 NC_001847.1 + 15535 0.67 0.410129
Target:  5'- uCCUCGCgGGCCucgucgucGCCggGUGGCGcGGGGGa -3'
miRNA:   3'- -GGGGCGgCCGG--------CGG--CGCCGCuCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 129673 0.67 0.410129
Target:  5'- -gCCGCU-GCCGCCGCcGC-AGAGAGc -3'
miRNA:   3'- ggGGCGGcCGGCGGCGcCGcUCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 68826 0.67 0.410129
Target:  5'- aCCCGCCgcaGGgCGCCGCgaagagcucgGGCGcGAGGc -3'
miRNA:   3'- gGGGCGG---CCgGCGGCG----------CCGCuCUCUc -5'
6689 3' -66.3 NC_001847.1 + 75854 0.67 0.410129
Target:  5'- aCCCUGgguacgguuuCCcGCCGCCGgGGCucGAGAGc -3'
miRNA:   3'- -GGGGC----------GGcCGGCGGCgCCGcuCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 133218 0.67 0.410129
Target:  5'- gCCCGagUGGCCGCCGCGccGCGGcGGGc -3'
miRNA:   3'- gGGGCg-GCCGGCGGCGC--CGCUcUCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.