miRNA display CGI


Results 141 - 160 of 487 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6689 3' -66.3 NC_001847.1 + 18688 0.67 0.405309
Target:  5'- gCCCCGCagcaCGGCCcgcgucaccgccagcGCCGCGGgGAGc--- -3'
miRNA:   3'- -GGGGCG----GCCGG---------------CGGCGCCgCUCucuc -5'
6689 3' -66.3 NC_001847.1 + 67938 0.67 0.402116
Target:  5'- gUCCGCgcagcacgaCGGCacacaGCCGCGGC-AGGGGGu -3'
miRNA:   3'- gGGGCG---------GCCGg----CGGCGCCGcUCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 104543 0.67 0.402116
Target:  5'- gCCgCGCCgcGGCCaGCCGCGcGC-AGAGGu -3'
miRNA:   3'- -GGgGCGG--CCGG-CGGCGC-CGcUCUCUc -5'
6689 3' -66.3 NC_001847.1 + 104902 0.67 0.402116
Target:  5'- gCCCCGCgGgGCCcgcGCgGCGGCGGGc--- -3'
miRNA:   3'- -GGGGCGgC-CGG---CGgCGCCGCUCucuc -5'
6689 3' -66.3 NC_001847.1 + 60044 0.67 0.402116
Target:  5'- uCUUCGUCGGgCGCgagGCGGCGcgaAGAGAGc -3'
miRNA:   3'- -GGGGCGGCCgGCGg--CGCCGC---UCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 133523 0.67 0.402116
Target:  5'- gCgCCGCgGuGCUGCCGCGGCGcAGuGc- -3'
miRNA:   3'- -GgGGCGgC-CGGCGGCGCCGC-UCuCuc -5'
6689 3' -66.3 NC_001847.1 + 59162 0.67 0.402116
Target:  5'- gCgCCGCuUGGCCaggggGCgGCGGuCGAGGGGGc -3'
miRNA:   3'- -GgGGCG-GCCGG-----CGgCGCC-GCUCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 38760 0.67 0.402116
Target:  5'- nCCCCGCCauuGCCGCCGcCGGCc------ -3'
miRNA:   3'- -GGGGCGGc--CGGCGGC-GCCGcucucuc -5'
6689 3' -66.3 NC_001847.1 + 10500 0.67 0.402116
Target:  5'- uCCCCGaCGGCC-CCGCGcugcuGCGGGccauGGAGc -3'
miRNA:   3'- -GGGGCgGCCGGcGGCGC-----CGCUC----UCUC- -5'
6689 3' -66.3 NC_001847.1 + 35450 0.67 0.402116
Target:  5'- -gCgGCgCGacGCgGCCGCGGCGcGAGAGg -3'
miRNA:   3'- ggGgCG-GC--CGgCGGCGCCGCuCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 2089 0.67 0.402116
Target:  5'- gCCCCGCgGgGCCcgcGCgGCGGCGGGc--- -3'
miRNA:   3'- -GGGGCGgC-CGG---CGgCGCCGCUCucuc -5'
6689 3' -66.3 NC_001847.1 + 1730 0.67 0.402116
Target:  5'- gCCgCGCCgcGGCCaGCCGCGcGC-AGAGGu -3'
miRNA:   3'- -GGgGCGG--CCGG-CGGCGC-CGcUCUCUc -5'
6689 3' -66.3 NC_001847.1 + 11813 0.67 0.402116
Target:  5'- uUCCGUcagaCGGCacaGCgCGCGGgGGGGGGGg -3'
miRNA:   3'- gGGGCG----GCCGg--CG-GCGCCgCUCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 54515 0.67 0.402116
Target:  5'- gCgCCGCCGucGCCaucggcaaCCGCGGCGGGGGcGGg -3'
miRNA:   3'- -GgGGCGGC--CGGc-------GGCGCCGCUCUC-UC- -5'
6689 3' -66.3 NC_001847.1 + 13840 0.67 0.402116
Target:  5'- gCCgCGCgCGGCguuuauucuuCGCUgaugGUGGCGAGGGGGg -3'
miRNA:   3'- -GGgGCG-GCCG----------GCGG----CGCCGCUCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 110898 0.67 0.402116
Target:  5'- cUCUCGCCcGCCG-CGCGGCGgcugaacguGGAGAu -3'
miRNA:   3'- -GGGGCGGcCGGCgGCGCCGC---------UCUCUc -5'
6689 3' -66.3 NC_001847.1 + 103221 0.67 0.402116
Target:  5'- aCCCGCCGcGCgaGCCGCGGCc------ -3'
miRNA:   3'- gGGGCGGC-CGg-CGGCGCCGcucucuc -5'
6689 3' -66.3 NC_001847.1 + 101645 0.67 0.402116
Target:  5'- gCCCGCCGccgcccgcgccGCCGCCGCGGacaucgccuCGaAGcGAGc -3'
miRNA:   3'- gGGGCGGC-----------CGGCGGCGCC---------GC-UCuCUC- -5'
6689 3' -66.3 NC_001847.1 + 81555 0.67 0.402116
Target:  5'- gCUCGCCGGCC-CCGCGcagcuGCGcGGGGc -3'
miRNA:   3'- gGGGCGGCCGGcGGCGC-----CGCuCUCUc -5'
6689 3' -66.3 NC_001847.1 + 71211 0.67 0.402116
Target:  5'- cCCCCG-CGGCCG-CGCugGGUGAuGGAGu -3'
miRNA:   3'- -GGGGCgGCCGGCgGCG--CCGCUcUCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.