miRNA display CGI


Results 81 - 100 of 487 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6689 3' -66.3 NC_001847.1 + 24409 0.67 0.394203
Target:  5'- gCCgUGgCGGCCGCCGUGGacaGAGcGGc -3'
miRNA:   3'- -GGgGCgGCCGGCGGCGCCg--CUCuCUc -5'
6689 3' -66.3 NC_001847.1 + 25340 0.66 0.459349
Target:  5'- cUCCCGCaucguccacguggCGGCgGUCGCGGCGAu---- -3'
miRNA:   3'- -GGGGCG-------------GCCGgCGGCGCCGCUcucuc -5'
6689 3' -66.3 NC_001847.1 + 25351 0.68 0.348174
Target:  5'- aCCCaCGCCGGCaaGCUgauggcaggggGCGGCGgcagggcGGAGGGg -3'
miRNA:   3'- -GGG-GCGGCCGg-CGG-----------CGCCGC-------UCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 25698 0.69 0.294467
Target:  5'- aCCUCGCCGacguaaGCCGCCacuGCGGCccGAGAa -3'
miRNA:   3'- -GGGGCGGC------CGGCGG---CGCCGcuCUCUc -5'
6689 3' -66.3 NC_001847.1 + 26775 0.69 0.286274
Target:  5'- aCCUGCCGcugccgcugcugccGCCGCCGCcgguGCGAGgaaGGAGg -3'
miRNA:   3'- gGGGCGGC--------------CGGCGGCGc---CGCUC---UCUC- -5'
6689 3' -66.3 NC_001847.1 + 27116 1.08 0.000449
Target:  5'- gCCCCGCCGGCCGCCGCGGCGAGAGAGc -3'
miRNA:   3'- -GGGGCGGCCGGCGGCGCCGCUCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 27261 0.67 0.418241
Target:  5'- aCCUgccgcgagaGCCGGaugugaggcugcCCGCCG-GGCGAGAGGa -3'
miRNA:   3'- gGGG---------CGGCC------------GGCGGCgCCGCUCUCUc -5'
6689 3' -66.3 NC_001847.1 + 27420 0.68 0.366566
Target:  5'- -gCCGCCGGCgcggucggugucguuCGCaGCGGCGcGGGGGc -3'
miRNA:   3'- ggGGCGGCCG---------------GCGgCGCCGCuCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 27507 0.73 0.162978
Target:  5'- gCCUCgGCC-GCCGCCGCGGCGgcggcGGGGAc -3'
miRNA:   3'- -GGGG-CGGcCGGCGGCGCCGC-----UCUCUc -5'
6689 3' -66.3 NC_001847.1 + 27539 0.67 0.386392
Target:  5'- gCCCGagaaCGGCgG-CGCGGCGGcuGGGAGc -3'
miRNA:   3'- gGGGCg---GCCGgCgGCGCCGCU--CUCUC- -5'
6689 3' -66.3 NC_001847.1 + 27700 0.69 0.288148
Target:  5'- --gCGCCGG-CGCaCGCGGCGGGGGcaAGg -3'
miRNA:   3'- gggGCGGCCgGCG-GCGCCGCUCUC--UC- -5'
6689 3' -66.3 NC_001847.1 + 27721 0.68 0.371079
Target:  5'- gCCCgCGCCgagcuGGCCgaGCUGUGGCGgauggugggcGGGGAGg -3'
miRNA:   3'- -GGG-GCGG-----CCGG--CGGCGCCGC----------UCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 27742 0.73 0.174921
Target:  5'- gCCgCGgCGGCgGuuGCGGCGGGGGGc -3'
miRNA:   3'- -GGgGCgGCCGgCggCGCCGCUCUCUc -5'
6689 3' -66.3 NC_001847.1 + 27901 0.67 0.394203
Target:  5'- -gUCGCCGGCCcgGCCGCGcuuGCG-GAGGc -3'
miRNA:   3'- ggGGCGGCCGG--CGGCGC---CGCuCUCUc -5'
6689 3' -66.3 NC_001847.1 + 28377 0.67 0.376391
Target:  5'- uCgCCGCCGGagacggcgccccccCCGCCGCGGCGccAGcgcGGGc -3'
miRNA:   3'- -GgGGCGGCC--------------GGCGGCGCCGC--UCu--CUC- -5'
6689 3' -66.3 NC_001847.1 + 28434 0.7 0.252467
Target:  5'- gCCCgCGCUGGCuaCGCCGCGGCGccgcgcGAcGGGc -3'
miRNA:   3'- -GGG-GCGGCCG--GCGGCGCCGCu-----CU-CUC- -5'
6689 3' -66.3 NC_001847.1 + 28532 0.66 0.43142
Target:  5'- gCCgCCGcCCGGCCGCgugcgcuucggcggCGCGGgCGAcacccgcGAGGGc -3'
miRNA:   3'- -GG-GGC-GGCCGGCG--------------GCGCC-GCU-------CUCUC- -5'
6689 3' -66.3 NC_001847.1 + 28869 0.68 0.334643
Target:  5'- --aCGCCGGCggCGCUGgGGCGAGuugcAGAGc -3'
miRNA:   3'- gggGCGGCCG--GCGGCgCCGCUC----UCUC- -5'
6689 3' -66.3 NC_001847.1 + 29062 0.7 0.252467
Target:  5'- gCUCGCCGGCCG-CGCGGCGccGGc- -3'
miRNA:   3'- gGGGCGGCCGGCgGCGCCGCucUCuc -5'
6689 3' -66.3 NC_001847.1 + 29145 0.66 0.443149
Target:  5'- -aCCGCUGcGCCGUCGCcugccgcgaGGCGcuGGAGg -3'
miRNA:   3'- ggGGCGGC-CGGCGGCG---------CCGCucUCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.