miRNA display CGI


Results 101 - 120 of 487 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6689 3' -66.3 NC_001847.1 + 29199 0.66 0.433918
Target:  5'- gCgCCGCCgGGCUcccggugcucucgGCCGCGGCGGGc--- -3'
miRNA:   3'- -GgGGCGG-CCGG-------------CGGCGCCGCUCucuc -5'
6689 3' -66.3 NC_001847.1 + 29241 0.67 0.386392
Target:  5'- gCCUGCCGGCCGCgGCcugcGCGccGGAc -3'
miRNA:   3'- gGGGCGGCCGGCGgCGc---CGCucUCUc -5'
6689 3' -66.3 NC_001847.1 + 29552 0.66 0.434753
Target:  5'- gCCCUGgaGGCCGCC--GGCGGGGGc- -3'
miRNA:   3'- -GGGGCggCCGGCGGcgCCGCUCUCuc -5'
6689 3' -66.3 NC_001847.1 + 29573 0.71 0.241408
Target:  5'- gCCgUGCCGGCUGCCGUcuuGCGAGAc-- -3'
miRNA:   3'- -GGgGCGGCCGGCGGCGc--CGCUCUcuc -5'
6689 3' -66.3 NC_001847.1 + 29576 0.66 0.42645
Target:  5'- gCCggCGCCGgcGCCGCCGCGcCGGGccGGGGg -3'
miRNA:   3'- gGG--GCGGC--CGGCGGCGCcGCUC--UCUC- -5'
6689 3' -66.3 NC_001847.1 + 29784 0.69 0.294467
Target:  5'- gCCgCC-CCGGCC-CgGCGGCGGGAGc- -3'
miRNA:   3'- -GG-GGcGGCCGGcGgCGCCGCUCUCuc -5'
6689 3' -66.3 NC_001847.1 + 29903 0.91 0.008344
Target:  5'- gCCCUGCCGGCCGCCGCGGggggccccuCGGGGGAGg -3'
miRNA:   3'- -GGGGCGGCCGGCGGCGCC---------GCUCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 29971 0.76 0.108236
Target:  5'- gCCgCCGCCgacgcggccgGGCCGgCGCGGCGGGAGc- -3'
miRNA:   3'- -GG-GGCGG----------CCGGCgGCGCCGCUCUCuc -5'
6689 3' -66.3 NC_001847.1 + 30050 0.66 0.456771
Target:  5'- gCCCCGCCGccgacggcggcuuCCGCCGCGuGCcgcccGGGGAc -3'
miRNA:   3'- -GGGGCGGCc------------GGCGGCGC-CGc----UCUCUc -5'
6689 3' -66.3 NC_001847.1 + 30252 0.66 0.443149
Target:  5'- -gUCGCUGGCggcguugcagcgCGCCGCGGCGcAGAcGAc -3'
miRNA:   3'- ggGGCGGCCG------------GCGGCGCCGC-UCU-CUc -5'
6689 3' -66.3 NC_001847.1 + 30254 0.68 0.355451
Target:  5'- gCCCCGCgGGgcgcucgccgccaCCGCUGCGGCGGc---- -3'
miRNA:   3'- -GGGGCGgCC-------------GGCGGCGCCGCUcucuc -5'
6689 3' -66.3 NC_001847.1 + 30357 0.67 0.40132
Target:  5'- gCCCggggaggCGCUGGCggCGCCGCccGGCGAGGacGAGc -3'
miRNA:   3'- -GGG-------GCGGCCG--GCGGCG--CCGCUCU--CUC- -5'
6689 3' -66.3 NC_001847.1 + 30405 0.67 0.410129
Target:  5'- gCCCGagUGGCCGCCGCGccGCGGcGGGc -3'
miRNA:   3'- gGGGCg-GCCGGCGGCGC--CGCUcUCUc -5'
6689 3' -66.3 NC_001847.1 + 30415 0.72 0.20116
Target:  5'- -gCCGCCGGCaaGCuCGUGGCGGGcgcGGAGg -3'
miRNA:   3'- ggGGCGGCCGg-CG-GCGCCGCUC---UCUC- -5'
6689 3' -66.3 NC_001847.1 + 30638 0.68 0.368818
Target:  5'- aCgCGgCGGCCGCCGaagaGGCGgugcuggcgcuguuGGAGGGc -3'
miRNA:   3'- gGgGCgGCCGGCGGCg---CCGC--------------UCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 30710 0.67 0.402116
Target:  5'- gCgCCGCgGuGCUGCCGCGGCGcAGuGc- -3'
miRNA:   3'- -GgGGCGgC-CGGCGGCGCCGC-UCuCuc -5'
6689 3' -66.3 NC_001847.1 + 30800 0.68 0.348897
Target:  5'- aCgCCGCCGcgucuGCCGCCGCGGCa------ -3'
miRNA:   3'- -GgGGCGGC-----CGGCGGCGCCGcucucuc -5'
6689 3' -66.3 NC_001847.1 + 30855 0.66 0.477615
Target:  5'- gCCgCCGCugCGGCUcuGCCGCGGCGGc---- -3'
miRNA:   3'- -GG-GGCG--GCCGG--CGGCGCCGCUcucuc -5'
6689 3' -66.3 NC_001847.1 + 30919 0.66 0.468872
Target:  5'- gCgCGCCGGCgG-UGCGGCG-GAGGc -3'
miRNA:   3'- gGgGCGGCCGgCgGCGCCGCuCUCUc -5'
6689 3' -66.3 NC_001847.1 + 31148 0.7 0.26394
Target:  5'- -gCUGCCGGCCGCgGCGGUGGc---- -3'
miRNA:   3'- ggGGCGGCCGGCGgCGCCGCUcucuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.