miRNA display CGI


Results 121 - 140 of 487 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6689 3' -66.3 NC_001847.1 + 31196 0.68 0.356185
Target:  5'- gCgCGCCGaggcGCCGCCGCuGGUGcuGGAGg -3'
miRNA:   3'- gGgGCGGC----CGGCGGCG-CCGCucUCUC- -5'
6689 3' -66.3 NC_001847.1 + 31236 0.66 0.434753
Target:  5'- gCgCCGCCcGCgGCCGCGGCGcccggcguGGAcuGGGa -3'
miRNA:   3'- -GgGGCGGcCGgCGGCGCCGC--------UCU--CUC- -5'
6689 3' -66.3 NC_001847.1 + 31365 0.67 0.421513
Target:  5'- gCCCCGCCGGCCcggguGCCgGCGcagucguccccgggcGCGGGcucGGGc -3'
miRNA:   3'- -GGGGCGGCCGG-----CGG-CGC---------------CGCUCu--CUC- -5'
6689 3' -66.3 NC_001847.1 + 31435 0.67 0.394203
Target:  5'- -gCgGCCGGCgGCCGCGGCGn----- -3'
miRNA:   3'- ggGgCGGCCGgCGGCGCCGCucucuc -5'
6689 3' -66.3 NC_001847.1 + 31454 0.72 0.205853
Target:  5'- gCCCCggcGCgGGCCGCCGCcGCGcguGGAGGu -3'
miRNA:   3'- -GGGG---CGgCCGGCGGCGcCGC---UCUCUc -5'
6689 3' -66.3 NC_001847.1 + 31537 0.66 0.4628
Target:  5'- cCCCCGCCucgucggacgacgacGaggccggcGCCGCCgGCGGCGGGccggccucgcccuAGGGg -3'
miRNA:   3'- -GGGGCGG---------------C--------CGGCGG-CGCCGCUC-------------UCUC- -5'
6689 3' -66.3 NC_001847.1 + 31795 0.7 0.275832
Target:  5'- gCCUGCCuuacGGCCGUgGCGGUGGGcggcgcGGGGg -3'
miRNA:   3'- gGGGCGG----CCGGCGgCGCCGCUC------UCUC- -5'
6689 3' -66.3 NC_001847.1 + 31853 0.66 0.434753
Target:  5'- gCCCCGCC-GCCGCCGCuGCu------ -3'
miRNA:   3'- -GGGGCGGcCGGCGGCGcCGcucucuc -5'
6689 3' -66.3 NC_001847.1 + 31865 0.66 0.42645
Target:  5'- gCUCGCCGGCguUGCUGCcGGCG-GAGc- -3'
miRNA:   3'- gGGGCGGCCG--GCGGCG-CCGCuCUCuc -5'
6689 3' -66.3 NC_001847.1 + 32083 0.69 0.281937
Target:  5'- gCCCCugggcGCCGGgCGUCGgGGCGcGAGGc -3'
miRNA:   3'- -GGGG-----CGGCCgGCGGCgCCGCuCUCUc -5'
6689 3' -66.3 NC_001847.1 + 32125 0.68 0.341716
Target:  5'- gCCC-CCGGgCGCCgGgGGCGGGGGcGGg -3'
miRNA:   3'- gGGGcGGCCgGCGG-CgCCGCUCUC-UC- -5'
6689 3' -66.3 NC_001847.1 + 32188 0.7 0.26394
Target:  5'- gCCCC-CCGGCCGgggcccgaggcCCGCGGgCGGGGccGGGg -3'
miRNA:   3'- -GGGGcGGCCGGC-----------GGCGCC-GCUCU--CUC- -5'
6689 3' -66.3 NC_001847.1 + 32300 0.71 0.230756
Target:  5'- gCCCCGCgacGCCGCCGCGGaaCGGGAc-- -3'
miRNA:   3'- -GGGGCGgc-CGGCGGCGCC--GCUCUcuc -5'
6689 3' -66.3 NC_001847.1 + 32309 0.69 0.320139
Target:  5'- aCCCCcCCGGggucgcagggggcCCGCgcggCGCGGCGcGGAGGGg -3'
miRNA:   3'- -GGGGcGGCC-------------GGCG----GCGCCGC-UCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 32409 0.68 0.374108
Target:  5'- gCCCCGUCGGCCGUCcagccgcuuuucgggGCGGUGGc---- -3'
miRNA:   3'- -GGGGCGGCCGGCGG---------------CGCCGCUcucuc -5'
6689 3' -66.3 NC_001847.1 + 32482 0.66 0.434753
Target:  5'- cCCCCGCCcucgcGGCCGCuCcCGGCGcgucaccccGAGAc -3'
miRNA:   3'- -GGGGCGG-----CCGGCG-GcGCCGCu--------CUCUc -5'
6689 3' -66.3 NC_001847.1 + 32779 0.67 0.410129
Target:  5'- -aCgGCCGGCCGCUGgaCGcGCGAGuccGAGc -3'
miRNA:   3'- ggGgCGGCCGGCGGC--GC-CGCUCu--CUC- -5'
6689 3' -66.3 NC_001847.1 + 32838 0.69 0.297025
Target:  5'- gCCCGCgUGGCCGCCgagaccgcggcgcucGCGcGCGAGAuccuggcgcugGAGg -3'
miRNA:   3'- gGGGCG-GCCGGCGG---------------CGC-CGCUCU-----------CUC- -5'
6689 3' -66.3 NC_001847.1 + 32871 0.66 0.434753
Target:  5'- aCCUCa-CGGCgGCCGaCGGCGAGgccucGGGGg -3'
miRNA:   3'- -GGGGcgGCCGgCGGC-GCCGCUC-----UCUC- -5'
6689 3' -66.3 NC_001847.1 + 33117 0.69 0.320819
Target:  5'- uCCUgGCCGaCCGCgGCGGCGGcGAGc- -3'
miRNA:   3'- -GGGgCGGCcGGCGgCGCCGCU-CUCuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.