miRNA display CGI


Results 61 - 80 of 487 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6689 3' -66.3 NC_001847.1 + 121913 0.68 0.355451
Target:  5'- gCCCCGCUGGCCaUCGCGGagcucgcCGAGcGGc -3'
miRNA:   3'- -GGGGCGGCCGGcGGCGCC-------GCUCuCUc -5'
6689 3' -66.3 NC_001847.1 + 120991 0.7 0.246886
Target:  5'- gCCgCC-CCGGCCGCCGCuGCGcagccggccGGAGAc -3'
miRNA:   3'- -GG-GGcGGCCGGCGGCGcCGC---------UCUCUc -5'
6689 3' -66.3 NC_001847.1 + 120841 0.76 0.105621
Target:  5'- gCCCCgagaggcgGCCGGCCacgccauuucGCCGCGGCGGGAaAGu -3'
miRNA:   3'- -GGGG--------CGGCCGG----------CGGCGCCGCUCUcUC- -5'
6689 3' -66.3 NC_001847.1 + 120133 0.71 0.220502
Target:  5'- gCUCGCgCGGCCccaCCGCGGCcGAGGGGc -3'
miRNA:   3'- gGGGCG-GCCGGc--GGCGCCG-CUCUCUc -5'
6689 3' -66.3 NC_001847.1 + 120076 0.81 0.047572
Target:  5'- cUCCUGCCGaGCCGCgCGgGGCGGGAGAu -3'
miRNA:   3'- -GGGGCGGC-CGGCG-GCgCCGCUCUCUc -5'
6689 3' -66.3 NC_001847.1 + 119155 0.69 0.281937
Target:  5'- gCgCCG-CGGCCGCCGCggGGCGGcGGGGc -3'
miRNA:   3'- -GgGGCgGCCGGCGGCG--CCGCUcUCUC- -5'
6689 3' -66.3 NC_001847.1 + 119095 0.69 0.281937
Target:  5'- gCgCCG-CGGCCGCCGCggGGCGGcGGGGc -3'
miRNA:   3'- -GgGGCgGCCGGCGGCG--CCGCUcUCUC- -5'
6689 3' -66.3 NC_001847.1 + 118748 0.71 0.215523
Target:  5'- gCCCCGCgCGGCUG-CGCGaGCGGGcGAa -3'
miRNA:   3'- -GGGGCG-GCCGGCgGCGC-CGCUCuCUc -5'
6689 3' -66.3 NC_001847.1 + 117901 0.66 0.451636
Target:  5'- uCCCCGCCcuuguugaGGuuGaCGCGGUGuGGGGc -3'
miRNA:   3'- -GGGGCGG--------CCggCgGCGCCGCuCUCUc -5'
6689 3' -66.3 NC_001847.1 + 116969 0.67 0.418241
Target:  5'- gUCCGCCaugGGcCCGCUGgGGCGAGcGuGg -3'
miRNA:   3'- gGGGCGG---CC-GGCGGCgCCGCUCuCuC- -5'
6689 3' -66.3 NC_001847.1 + 116749 0.69 0.281937
Target:  5'- gCCCCGCgGGcCCGCa--GGCGAGGacgccGAGg -3'
miRNA:   3'- -GGGGCGgCC-GGCGgcgCCGCUCU-----CUC- -5'
6689 3' -66.3 NC_001847.1 + 116428 0.66 0.451636
Target:  5'- gCCCGCUGGCgCuccCCGCGGCGcuGGcGg -3'
miRNA:   3'- gGGGCGGCCG-Gc--GGCGCCGCucUCuC- -5'
6689 3' -66.3 NC_001847.1 + 116385 0.66 0.434753
Target:  5'- gCCgCCGCCuuaGCCGCgGCGGCGGc---- -3'
miRNA:   3'- -GG-GGCGGc--CGGCGgCGCCGCUcucuc -5'
6689 3' -66.3 NC_001847.1 + 116197 0.66 0.468872
Target:  5'- uCgCCGCCacggacGCCGCgGCGGCGcuGGAa -3'
miRNA:   3'- -GgGGCGGc-----CGGCGgCGCCGCucUCUc -5'
6689 3' -66.3 NC_001847.1 + 115963 0.66 0.451636
Target:  5'- aCCCCGCCc-CCGCCGUGcuGCGcGGGGu -3'
miRNA:   3'- -GGGGCGGccGGCGGCGC--CGCuCUCUc -5'
6689 3' -66.3 NC_001847.1 + 115744 0.7 0.269833
Target:  5'- gCCUGCUGcGUCGCCGCGGagcCGAcgGGGAGc -3'
miRNA:   3'- gGGGCGGC-CGGCGGCGCC---GCU--CUCUC- -5'
6689 3' -66.3 NC_001847.1 + 115263 0.68 0.371079
Target:  5'- aCUCCGCCGGuuGgCgGUGGCGGGc--- -3'
miRNA:   3'- -GGGGCGGCCggC-GgCGCCGCUCucuc -5'
6689 3' -66.3 NC_001847.1 + 114139 0.71 0.215523
Target:  5'- gCCCGCaCaGCCGCgCGCGGUGccgauuGGGAGg -3'
miRNA:   3'- gGGGCG-GcCGGCG-GCGCCGCu-----CUCUC- -5'
6689 3' -66.3 NC_001847.1 + 113688 0.7 0.251904
Target:  5'- uCgUCGUCGGCUGCCGCGuccgcguGCGGGAcGGGg -3'
miRNA:   3'- -GgGGCGGCCGGCGGCGC-------CGCUCU-CUC- -5'
6689 3' -66.3 NC_001847.1 + 113524 0.73 0.170856
Target:  5'- gCCCgCGCCGGCCaagcGCCGCcaGCGAGuuuAGGGg -3'
miRNA:   3'- -GGG-GCGGCCGG----CGGCGc-CGCUC---UCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.