miRNA display CGI


Results 81 - 100 of 487 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6689 3' -66.3 NC_001847.1 + 111410 0.69 0.306769
Target:  5'- gCCCCGCCaggggcggcgcucGGCCGgggGCGGgGGGAGGa -3'
miRNA:   3'- -GGGGCGG-------------CCGGCgg-CGCCgCUCUCUc -5'
6689 3' -66.3 NC_001847.1 + 110898 0.67 0.402116
Target:  5'- cUCUCGCCcGCCG-CGCGGCGgcugaacguGGAGAu -3'
miRNA:   3'- -GGGGCGGcCGGCgGCGCCGC---------UCUCUc -5'
6689 3' -66.3 NC_001847.1 + 110678 0.68 0.363579
Target:  5'- aCCUGCCGcGCUG-CGUGcGCGAGGGuGa -3'
miRNA:   3'- gGGGCGGC-CGGCgGCGC-CGCUCUCuC- -5'
6689 3' -66.3 NC_001847.1 + 110198 0.69 0.312065
Target:  5'- aCCUGCCGggcaaGCCGCCGCaGCugcuguaccuuuauGGGGGGGg -3'
miRNA:   3'- gGGGCGGC-----CGGCGGCGcCG--------------CUCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 109940 0.66 0.443149
Target:  5'- uCUuuGCCGGCCGCgCGCGGgGc----- -3'
miRNA:   3'- -GGggCGGCCGGCG-GCGCCgCucucuc -5'
6689 3' -66.3 NC_001847.1 + 109331 0.73 0.174921
Target:  5'- gCCUGcCCGGCCGaCGCGGCG-GAGcAGc -3'
miRNA:   3'- gGGGC-GGCCGGCgGCGCCGCuCUC-UC- -5'
6689 3' -66.3 NC_001847.1 + 109164 0.67 0.410129
Target:  5'- gCCagaGCCGGCCGCgCGCuuguucccaaGGCGucGGGGc -3'
miRNA:   3'- gGGg--CGGCCGGCG-GCG----------CCGCucUCUC- -5'
6689 3' -66.3 NC_001847.1 + 108940 0.68 0.363579
Target:  5'- uCCCCGCUucCCGCCcaggaccccgGCGGUGAGcGAGc -3'
miRNA:   3'- -GGGGCGGccGGCGG----------CGCCGCUCuCUC- -5'
6689 3' -66.3 NC_001847.1 + 108762 0.66 0.42645
Target:  5'- gCCgCGCUGGgCGCCggacgcgccggGCGGCccacccGGGAGAGc -3'
miRNA:   3'- -GGgGCGGCCgGCGG-----------CGCCG------CUCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 108015 0.77 0.091139
Target:  5'- cCCUCGCCGGCucucuCGCCGCGGCGGccGGcGGGg -3'
miRNA:   3'- -GGGGCGGCCG-----GCGGCGCCGCU--CU-CUC- -5'
6689 3' -66.3 NC_001847.1 + 107972 0.74 0.130494
Target:  5'- aCCCCGCCgacauuauugggcuGGCCGCCGCGGCu------ -3'
miRNA:   3'- -GGGGCGG--------------CCGGCGGCGCCGcucucuc -5'
6689 3' -66.3 NC_001847.1 + 107969 0.66 0.481134
Target:  5'- cCCaCCGCgCGuGCCuuuuuuuuguuuuaCCGCGGCGcGGGAGa -3'
miRNA:   3'- -GG-GGCG-GC-CGGc-------------GGCGCCGCuCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 107844 0.7 0.275832
Target:  5'- gCCCGCCGGCacCGCCGUccucucgcccGGCGGGcAGc- -3'
miRNA:   3'- gGGGCGGCCG--GCGGCG----------CCGCUC-UCuc -5'
6689 3' -66.3 NC_001847.1 + 107811 0.69 0.320819
Target:  5'- -gCCGCggcaaagcgCGGCgGCgGCGGCGcGGAGGGg -3'
miRNA:   3'- ggGGCG---------GCCGgCGgCGCCGC-UCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 107654 0.7 0.246886
Target:  5'- gUCgGCCGGCCGUcaaaaCGCaGGgGAGGGGGg -3'
miRNA:   3'- gGGgCGGCCGGCG-----GCG-CCgCUCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 107631 0.83 0.034211
Target:  5'- uCCCCGCC-GCCGCCGCGGCGGcGGccGAGg -3'
miRNA:   3'- -GGGGCGGcCGGCGGCGCCGCU-CU--CUC- -5'
6689 3' -66.3 NC_001847.1 + 107516 0.68 0.348897
Target:  5'- cCCCCGUCgGGCCGagguCCGCGGacuCGAuGAGGu -3'
miRNA:   3'- -GGGGCGG-CCGGC----GGCGCC---GCU-CUCUc -5'
6689 3' -66.3 NC_001847.1 + 107402 0.75 0.125242
Target:  5'- cCCCCGCCGcaaccGCCGCCGCGGCu------ -3'
miRNA:   3'- -GGGGCGGC-----CGGCGGCGCCGcucucuc -5'
6689 3' -66.3 NC_001847.1 + 106746 0.85 0.021058
Target:  5'- gCCCgCGCUGG-CGCCGCGGCGGGGGGGg -3'
miRNA:   3'- -GGG-GCGGCCgGCGGCGCCGCUCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 106698 0.67 0.378683
Target:  5'- gCCCGUCGcGCggCGCCGCGGCGuAGccAGc -3'
miRNA:   3'- gGGGCGGC-CG--GCGGCGCCGC-UCucUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.