miRNA display CGI


Results 101 - 120 of 487 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6689 3' -66.3 NC_001847.1 + 106527 0.69 0.300893
Target:  5'- gCCCCG-CGGCCGCCGCGuaGCGcGcGGc -3'
miRNA:   3'- -GGGGCgGCCGGCGGCGC--CGCuCuCUc -5'
6689 3' -66.3 NC_001847.1 + 106301 0.67 0.40132
Target:  5'- uCCCCGaCCGGCgGCaGCGGCGccgucacgcucccGGuGAu -3'
miRNA:   3'- -GGGGC-GGCCGgCGgCGCCGC-------------UCuCUc -5'
6689 3' -66.3 NC_001847.1 + 106052 0.7 0.275832
Target:  5'- gCCCgCGCCGuGCuCGCCgGCGGC-AGGGGc -3'
miRNA:   3'- -GGG-GCGGC-CG-GCGG-CGCCGcUCUCUc -5'
6689 3' -66.3 NC_001847.1 + 105911 0.71 0.215523
Target:  5'- gCCgCgGCCGGCaggccgcggccCGCCGCGGCcGAGAGc- -3'
miRNA:   3'- -GG-GgCGGCCG-----------GCGGCGCCG-CUCUCuc -5'
6689 3' -66.3 NC_001847.1 + 105691 0.66 0.42645
Target:  5'- aCgCGCgGGCCGCCGCGccGCGcGucGAGu -3'
miRNA:   3'- gGgGCGgCCGGCGGCGC--CGCuCu-CUC- -5'
6689 3' -66.3 NC_001847.1 + 105642 0.69 0.307427
Target:  5'- -gCgGCCGaagcGCCGcCCGCGGCcGGAGAGc -3'
miRNA:   3'- ggGgCGGC----CGGC-GGCGCCGcUCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 105594 0.69 0.300893
Target:  5'- cCCCCGCCGGCgGCCuccaggGCcGCGAGc--- -3'
miRNA:   3'- -GGGGCGGCCGgCGG------CGcCGCUCucuc -5'
6689 3' -66.3 NC_001847.1 + 105166 0.67 0.394203
Target:  5'- gCCgCGCCGGCCcgGCCGCgucGGCGGcGGcGg -3'
miRNA:   3'- -GGgGCGGCCGG--CGGCG---CCGCUcUCuC- -5'
6689 3' -66.3 NC_001847.1 + 104902 0.67 0.402116
Target:  5'- gCCCCGCgGgGCCcgcGCgGCGGCGGGc--- -3'
miRNA:   3'- -GGGGCGgC-CGG---CGgCGCCGCUCucuc -5'
6689 3' -66.3 NC_001847.1 + 104543 0.67 0.402116
Target:  5'- gCCgCGCCgcGGCCaGCCGCGcGC-AGAGGu -3'
miRNA:   3'- -GGgGCGG--CCGG-CGGCGC-CGcUCUCUc -5'
6689 3' -66.3 NC_001847.1 + 104327 0.73 0.155428
Target:  5'- gCCCCGCC-GCCguguuuGCCGCGGCGGcAGAc -3'
miRNA:   3'- -GGGGCGGcCGG------CGGCGCCGCUcUCUc -5'
6689 3' -66.3 NC_001847.1 + 104048 0.66 0.476737
Target:  5'- gCCCGCaggccagguacacCGGCCGCaGCGGCGcgccGAGc -3'
miRNA:   3'- gGGGCG-------------GCCGGCGgCGCCGCucu-CUC- -5'
6689 3' -66.3 NC_001847.1 + 103899 0.71 0.21064
Target:  5'- gUCCaCGCCGGgCGCCGCGGcCGcGGGcGg -3'
miRNA:   3'- -GGG-GCGGCCgGCGGCGCC-GCuCUCuC- -5'
6689 3' -66.3 NC_001847.1 + 103787 0.67 0.386392
Target:  5'- aCCCgGCCGGCggggcuucCGCCGCcGGCGGcGGc- -3'
miRNA:   3'- -GGGgCGGCCG--------GCGGCG-CCGCUcUCuc -5'
6689 3' -66.3 NC_001847.1 + 103722 0.76 0.095743
Target:  5'- -gCCGCCGGCCGCCGCccgccGGCGccGGGAa -3'
miRNA:   3'- ggGGCGGCCGGCGGCG-----CCGCu-CUCUc -5'
6689 3' -66.3 NC_001847.1 + 103566 0.68 0.348897
Target:  5'- cCCCCuagggcgagGCCGGcCCGCCGCcGGCGGc---- -3'
miRNA:   3'- -GGGG---------CGGCC-GGCGGCG-CCGCUcucuc -5'
6689 3' -66.3 NC_001847.1 + 103277 0.68 0.363579
Target:  5'- gCUCCGCCGGCaGCaaCGcCGGCGAGcccGGGc -3'
miRNA:   3'- -GGGGCGGCCGgCG--GC-GCCGCUCu--CUC- -5'
6689 3' -66.3 NC_001847.1 + 103221 0.67 0.402116
Target:  5'- aCCCGCCGcGCgaGCCGCGGCc------ -3'
miRNA:   3'- gGGGCGGC-CGg-CGGCGCCGcucucuc -5'
6689 3' -66.3 NC_001847.1 + 103189 0.73 0.155428
Target:  5'- gCCCGCC-GCCGCCGCGGC-AGGc-- -3'
miRNA:   3'- gGGGCGGcCGGCGGCGCCGcUCUcuc -5'
6689 3' -66.3 NC_001847.1 + 103141 0.7 0.269833
Target:  5'- -gCCGCCGGCgCGCgaagguccuCGCGGCucGAGGGc -3'
miRNA:   3'- ggGGCGGCCG-GCG---------GCGCCGcuCUCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.