miRNA display CGI


Results 81 - 100 of 487 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6689 3' -66.3 NC_001847.1 + 96177 0.71 0.21064
Target:  5'- gCCCCGCCgcGGCCGCCGCcauGGCGc----- -3'
miRNA:   3'- -GGGGCGG--CCGGCGGCG---CCGCucucuc -5'
6689 3' -66.3 NC_001847.1 + 16044 0.71 0.21503
Target:  5'- gCCCCGCCgccccgcGGCgGCCGCGGCGccucugcuGGGc -3'
miRNA:   3'- -GGGGCGG-------CCGgCGGCGCCGCucu-----CUC- -5'
6689 3' -66.3 NC_001847.1 + 105911 0.71 0.215523
Target:  5'- gCCgCgGCCGGCaggccgcggccCGCCGCGGCcGAGAGc- -3'
miRNA:   3'- -GG-GgCGGCCG-----------GCGGCGCCG-CUCUCuc -5'
6689 3' -66.3 NC_001847.1 + 118748 0.71 0.215523
Target:  5'- gCCCCGCgCGGCUG-CGCGaGCGGGcGAa -3'
miRNA:   3'- -GGGGCG-GCCGGCgGCGC-CGCUCuCUc -5'
6689 3' -66.3 NC_001847.1 + 127194 0.71 0.22
Target:  5'- aCCCGCauggcgcgaacucCGGCgCGgCGCGcGCGGGAGGGu -3'
miRNA:   3'- gGGGCG-------------GCCG-GCgGCGC-CGCUCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 8066 0.71 0.229712
Target:  5'- gCCCGCgCGcagaggggggcaCCGCCGCGGCGAGAu-- -3'
miRNA:   3'- gGGGCG-GCc-----------GGCGGCGCCGCUCUcuc -5'
6689 3' -66.3 NC_001847.1 + 92421 0.71 0.230233
Target:  5'- gCCCGCgCGGCCGcCCGCcgcgccaaauccgGGCuGGGAGGu -3'
miRNA:   3'- gGGGCG-GCCGGC-GGCG-------------CCG-CUCUCUc -5'
6689 3' -66.3 NC_001847.1 + 76915 0.72 0.205853
Target:  5'- gCgCCGCCGcuGCCGCC-CGGCGGGcAGAu -3'
miRNA:   3'- -GgGGCGGC--CGGCGGcGCCGCUC-UCUc -5'
6689 3' -66.3 NC_001847.1 + 30415 0.72 0.20116
Target:  5'- -gCCGCCGGCaaGCuCGUGGCGGGcgcGGAGg -3'
miRNA:   3'- ggGGCGGCCGg-CG-GCGCCGCUC---UCUC- -5'
6689 3' -66.3 NC_001847.1 + 102255 0.72 0.187637
Target:  5'- uCCCCGCCGGCCcccgaggccucGCCGuCGGCcgccguGAGGu -3'
miRNA:   3'- -GGGGCGGCCGG-----------CGGC-GCCGcu----CUCUc -5'
6689 3' -66.3 NC_001847.1 + 38651 0.73 0.166875
Target:  5'- gCCCGCCGcGuuGCCGUGGCGAc---- -3'
miRNA:   3'- gGGGCGGC-CggCGGCGCCGCUcucuc -5'
6689 3' -66.3 NC_001847.1 + 46598 0.73 0.166875
Target:  5'- gCCCCGCCGGCgCGgccUCGCGGCGcacGAGc -3'
miRNA:   3'- -GGGGCGGCCG-GC---GGCGCCGCucuCUC- -5'
6689 3' -66.3 NC_001847.1 + 113524 0.73 0.170856
Target:  5'- gCCCgCGCCGGCCaagcGCCGCcaGCGAGuuuAGGGg -3'
miRNA:   3'- -GGG-GCGGCCGG----CGGCGc-CGCUC---UCUC- -5'
6689 3' -66.3 NC_001847.1 + 74399 0.73 0.170856
Target:  5'- -aCCGCgCGGCCGCCGCGcGCGcGcGGGc -3'
miRNA:   3'- ggGGCG-GCCGGCGGCGC-CGCuCuCUC- -5'
6689 3' -66.3 NC_001847.1 + 27742 0.73 0.174921
Target:  5'- gCCgCGgCGGCgGuuGCGGCGGGGGGc -3'
miRNA:   3'- -GGgGCgGCCGgCggCGCCGCUCUCUc -5'
6689 3' -66.3 NC_001847.1 + 33233 0.72 0.18331
Target:  5'- gCCgCGCCGGgCGCCGCGGCGc----- -3'
miRNA:   3'- -GGgGCGGCCgGCGGCGCCGCucucuc -5'
6689 3' -66.3 NC_001847.1 + 97700 0.72 0.18331
Target:  5'- gCCCGCUGcugcgcucGCCGUCGuCGGCGGGGGcAGa -3'
miRNA:   3'- gGGGCGGC--------CGGCGGC-GCCGCUCUC-UC- -5'
6689 3' -66.3 NC_001847.1 + 35943 0.72 0.187637
Target:  5'- gCCgCCGCgCGGCCGCCuCGcGCGAGGaccacGAGg -3'
miRNA:   3'- -GG-GGCG-GCCGGCGGcGC-CGCUCU-----CUC- -5'
6689 3' -66.3 NC_001847.1 + 41621 0.72 0.187637
Target:  5'- gCUCCGCCgugauGGCCGCgaGCGGCGcgccGGGGGGc -3'
miRNA:   3'- -GGGGCGG-----CCGGCGg-CGCCGC----UCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 73703 0.71 0.230756
Target:  5'- gCCUCGCCGcGCCcggcggcgcgGCCGCGgGCGucGAGGGc -3'
miRNA:   3'- -GGGGCGGC-CGG----------CGGCGC-CGCu-CUCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.