Results 101 - 120 of 487 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6689 | 3' | -66.3 | NC_001847.1 | + | 29573 | 0.71 | 0.241408 |
Target: 5'- gCCgUGCCGGCUGCCGUcuuGCGAGAc-- -3' miRNA: 3'- -GGgGCGGCCGGCGGCGc--CGCUCUcuc -5' |
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6689 | 3' | -66.3 | NC_001847.1 | + | 68062 | 0.7 | 0.246886 |
Target: 5'- gCCUCG-CGGCgCGCCuGCGGCGGGGcGAa -3' miRNA: 3'- -GGGGCgGCCG-GCGG-CGCCGCUCU-CUc -5' |
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6689 | 3' | -66.3 | NC_001847.1 | + | 107654 | 0.7 | 0.246886 |
Target: 5'- gUCgGCCGGCCGUcaaaaCGCaGGgGAGGGGGg -3' miRNA: 3'- gGGgCGGCCGGCG-----GCG-CCgCUCUCUC- -5' |
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6689 | 3' | -66.3 | NC_001847.1 | + | 120991 | 0.7 | 0.246886 |
Target: 5'- gCCgCC-CCGGCCGCCGCuGCGcagccggccGGAGAc -3' miRNA: 3'- -GG-GGcGGCCGGCGGCGcCGC---------UCUCUc -5' |
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6689 | 3' | -66.3 | NC_001847.1 | + | 38844 | 0.7 | 0.252467 |
Target: 5'- gCCCCGCCauuGCCGCCGcCGGCcccGAGu- -3' miRNA: 3'- -GGGGCGGc--CGGCGGC-GCCGcu-CUCuc -5' |
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6689 | 3' | -66.3 | NC_001847.1 | + | 118748 | 0.71 | 0.215523 |
Target: 5'- gCCCCGCgCGGCUG-CGCGaGCGGGcGAa -3' miRNA: 3'- -GGGGCG-GCCGGCgGCGC-CGCUCuCUc -5' |
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6689 | 3' | -66.3 | NC_001847.1 | + | 105911 | 0.71 | 0.215523 |
Target: 5'- gCCgCgGCCGGCaggccgcggccCGCCGCGGCcGAGAGc- -3' miRNA: 3'- -GG-GgCGGCCG-----------GCGGCGCCG-CUCUCuc -5' |
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6689 | 3' | -66.3 | NC_001847.1 | + | 27742 | 0.73 | 0.174921 |
Target: 5'- gCCgCGgCGGCgGuuGCGGCGGGGGGc -3' miRNA: 3'- -GGgGCgGCCGgCggCGCCGCUCUCUc -5' |
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6689 | 3' | -66.3 | NC_001847.1 | + | 33233 | 0.72 | 0.18331 |
Target: 5'- gCCgCGCCGGgCGCCGCGGCGc----- -3' miRNA: 3'- -GGgGCGGCCgGCGGCGCCGCucucuc -5' |
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6689 | 3' | -66.3 | NC_001847.1 | + | 97700 | 0.72 | 0.18331 |
Target: 5'- gCCCGCUGcugcgcucGCCGUCGuCGGCGGGGGcAGa -3' miRNA: 3'- gGGGCGGC--------CGGCGGC-GCCGCUCUC-UC- -5' |
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6689 | 3' | -66.3 | NC_001847.1 | + | 35943 | 0.72 | 0.187637 |
Target: 5'- gCCgCCGCgCGGCCGCCuCGcGCGAGGaccacGAGg -3' miRNA: 3'- -GG-GGCG-GCCGGCGGcGC-CGCUCU-----CUC- -5' |
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6689 | 3' | -66.3 | NC_001847.1 | + | 41621 | 0.72 | 0.187637 |
Target: 5'- gCUCCGCCgugauGGCCGCgaGCGGCGcgccGGGGGGc -3' miRNA: 3'- -GGGGCGG-----CCGGCGg-CGCCGC----UCUCUC- -5' |
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6689 | 3' | -66.3 | NC_001847.1 | + | 102255 | 0.72 | 0.187637 |
Target: 5'- uCCCCGCCGGCCcccgaggccucGCCGuCGGCcgccguGAGGu -3' miRNA: 3'- -GGGGCGGCCGG-----------CGGC-GCCGcu----CUCUc -5' |
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6689 | 3' | -66.3 | NC_001847.1 | + | 30415 | 0.72 | 0.20116 |
Target: 5'- -gCCGCCGGCaaGCuCGUGGCGGGcgcGGAGg -3' miRNA: 3'- ggGGCGGCCGg-CG-GCGCCGCUC---UCUC- -5' |
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6689 | 3' | -66.3 | NC_001847.1 | + | 76915 | 0.72 | 0.205853 |
Target: 5'- gCgCCGCCGcuGCCGCC-CGGCGGGcAGAu -3' miRNA: 3'- -GgGGCGGC--CGGCGGcGCCGCUC-UCUc -5' |
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6689 | 3' | -66.3 | NC_001847.1 | + | 134267 | 0.72 | 0.205853 |
Target: 5'- gCCCCggcGCgGGCCGCCGCcGCGcguGGAGGu -3' miRNA: 3'- -GGGG---CGgCCGGCGGCGcCGC---UCUCUc -5' |
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6689 | 3' | -66.3 | NC_001847.1 | + | 103899 | 0.71 | 0.21064 |
Target: 5'- gUCCaCGCCGGgCGCCGCGGcCGcGGGcGg -3' miRNA: 3'- -GGG-GCGGCCgGCGGCGCC-GCuCUCuC- -5' |
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6689 | 3' | -66.3 | NC_001847.1 | + | 56890 | 0.71 | 0.21064 |
Target: 5'- gCCCGCCGGCgacggcgaCGCCgGCGgGCGGGuGAc -3' miRNA: 3'- gGGGCGGCCG--------GCGG-CGC-CGCUCuCUc -5' |
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6689 | 3' | -66.3 | NC_001847.1 | + | 96177 | 0.71 | 0.21064 |
Target: 5'- gCCCCGCCgcGGCCGCCGCcauGGCGc----- -3' miRNA: 3'- -GGGGCGG--CCGGCGGCG---CCGCucucuc -5' |
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6689 | 3' | -66.3 | NC_001847.1 | + | 16044 | 0.71 | 0.21503 |
Target: 5'- gCCCCGCCgccccgcGGCgGCCGCGGCGccucugcuGGGc -3' miRNA: 3'- -GGGGCGG-------CCGgCGGCGCCGCucu-----CUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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