miRNA display CGI


Results 121 - 140 of 487 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6689 3' -66.3 NC_001847.1 + 115744 0.7 0.269833
Target:  5'- gCCUGCUGcGUCGCCGCGGagcCGAcgGGGAGc -3'
miRNA:   3'- gGGGCGGC-CGGCGGCGCC---GCU--CUCUC- -5'
6689 3' -66.3 NC_001847.1 + 101020 0.7 0.269833
Target:  5'- -aCUGCC-GCCGCCGCGGCcGGGGu- -3'
miRNA:   3'- ggGGCGGcCGGCGGCGCCGcUCUCuc -5'
6689 3' -66.3 NC_001847.1 + 124552 0.71 0.236031
Target:  5'- gCCggCGCCGGCC-CgCGCGcGCGGGGGGGc -3'
miRNA:   3'- gGG--GCGGCCGGcG-GCGC-CGCUCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 76403 0.71 0.236031
Target:  5'- --gCGCCGGggGCCGCGGCGGGGGc- -3'
miRNA:   3'- gggGCGGCCggCGGCGCCGCUCUCuc -5'
6689 3' -66.3 NC_001847.1 + 13975 0.71 0.236031
Target:  5'- gCCCGCCccuGGCCGgCaaGCGGCGGGucauGGAGc -3'
miRNA:   3'- gGGGCGG---CCGGCgG--CGCCGCUC----UCUC- -5'
6689 3' -66.3 NC_001847.1 + 30415 0.72 0.20116
Target:  5'- -gCCGCCGGCaaGCuCGUGGCGGGcgcGGAGg -3'
miRNA:   3'- ggGGCGGCCGg-CG-GCGCCGCUC---UCUC- -5'
6689 3' -66.3 NC_001847.1 + 76915 0.72 0.205853
Target:  5'- gCgCCGCCGcuGCCGCC-CGGCGGGcAGAu -3'
miRNA:   3'- -GgGGCGGC--CGGCGGcGCCGCUC-UCUc -5'
6689 3' -66.3 NC_001847.1 + 134267 0.72 0.205853
Target:  5'- gCCCCggcGCgGGCCGCCGCcGCGcguGGAGGu -3'
miRNA:   3'- -GGGG---CGgCCGGCGGCGcCGC---UCUCUc -5'
6689 3' -66.3 NC_001847.1 + 103899 0.71 0.21064
Target:  5'- gUCCaCGCCGGgCGCCGCGGcCGcGGGcGg -3'
miRNA:   3'- -GGG-GCGGCCgGCGGCGCC-GCuCUCuC- -5'
6689 3' -66.3 NC_001847.1 + 56890 0.71 0.21064
Target:  5'- gCCCGCCGGCgacggcgaCGCCgGCGgGCGGGuGAc -3'
miRNA:   3'- gGGGCGGCCG--------GCGG-CGC-CGCUCuCUc -5'
6689 3' -66.3 NC_001847.1 + 96177 0.71 0.21064
Target:  5'- gCCCCGCCgcGGCCGCCGCcauGGCGc----- -3'
miRNA:   3'- -GGGGCGG--CCGGCGGCG---CCGCucucuc -5'
6689 3' -66.3 NC_001847.1 + 16044 0.71 0.21503
Target:  5'- gCCCCGCCgccccgcGGCgGCCGCGGCGccucugcuGGGc -3'
miRNA:   3'- -GGGGCGG-------CCGgCGGCGCCGCucu-----CUC- -5'
6689 3' -66.3 NC_001847.1 + 122544 0.7 0.269833
Target:  5'- aCCCUGCCGGUCgcugGCCGCacgaguGCGAGGGc- -3'
miRNA:   3'- -GGGGCGGCCGG----CGGCGc-----CGCUCUCuc -5'
6689 3' -66.3 NC_001847.1 + 105911 0.71 0.215523
Target:  5'- gCCgCgGCCGGCaggccgcggccCGCCGCGGCcGAGAGc- -3'
miRNA:   3'- -GG-GgCGGCCG-----------GCGGCGCCG-CUCUCuc -5'
6689 3' -66.3 NC_001847.1 + 118748 0.71 0.215523
Target:  5'- gCCCCGCgCGGCUG-CGCGaGCGGGcGAa -3'
miRNA:   3'- -GGGGCG-GCCGGCgGCGC-CGCUCuCUc -5'
6689 3' -66.3 NC_001847.1 + 127194 0.71 0.22
Target:  5'- aCCCGCauggcgcgaacucCGGCgCGgCGCGcGCGGGAGGGu -3'
miRNA:   3'- gGGGCG-------------GCCG-GCgGCGC-CGCUCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 8066 0.71 0.229712
Target:  5'- gCCCGCgCGcagaggggggcaCCGCCGCGGCGAGAu-- -3'
miRNA:   3'- gGGGCG-GCc-----------GGCGGCGCCGCUCUcuc -5'
6689 3' -66.3 NC_001847.1 + 92421 0.71 0.230233
Target:  5'- gCCCGCgCGGCCGcCCGCcgcgccaaauccgGGCuGGGAGGu -3'
miRNA:   3'- gGGGCG-GCCGGC-GGCG-------------CCG-CUCUCUc -5'
6689 3' -66.3 NC_001847.1 + 73703 0.71 0.230756
Target:  5'- gCCUCGCCGcGCCcggcggcgcgGCCGCGgGCGucGAGGGc -3'
miRNA:   3'- -GGGGCGGC-CGG----------CGGCGC-CGCu-CUCUC- -5'
6689 3' -66.3 NC_001847.1 + 32300 0.71 0.230756
Target:  5'- gCCCCGCgacGCCGCCGCGGaaCGGGAc-- -3'
miRNA:   3'- -GGGGCGgc-CGGCGGCGCC--GCUCUcuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.