miRNA display CGI


Results 61 - 80 of 487 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6689 3' -66.3 NC_001847.1 + 32482 0.66 0.434753
Target:  5'- cCCCCGCCcucgcGGCCGCuCcCGGCGcgucaccccGAGAc -3'
miRNA:   3'- -GGGGCGG-----CCGGCG-GcGCCGCu--------CUCUc -5'
6689 3' -66.3 NC_001847.1 + 31853 0.66 0.434753
Target:  5'- gCCCCGCC-GCCGCCGCuGCu------ -3'
miRNA:   3'- -GGGGCGGcCGGCGGCGcCGcucucuc -5'
6689 3' -66.3 NC_001847.1 + 95770 0.66 0.477615
Target:  5'- --gCGCgGGCCGCUcUGGCGcGGGGGg -3'
miRNA:   3'- gggGCGgCCGGCGGcGCCGCuCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 95689 0.66 0.477615
Target:  5'- --gCGCgGGCCGCUcUGGCGcGGGGGg -3'
miRNA:   3'- gggGCGgCCGGCGGcGCCGCuCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 1235 0.66 0.476737
Target:  5'- gCCCGCaggccagguacacCGGCCGCaGCGGCGcgccGAGc -3'
miRNA:   3'- gGGGCG-------------GCCGGCGgCGCCGCucu-CUC- -5'
6689 3' -66.3 NC_001847.1 + 116197 0.66 0.468872
Target:  5'- uCgCCGCCacggacGCCGCgGCGGCGcuGGAa -3'
miRNA:   3'- -GgGGCGGc-----CGGCGgCGCCGCucUCUc -5'
6689 3' -66.3 NC_001847.1 + 80070 0.66 0.460211
Target:  5'- cCCCCG-CGGCCGCCagcauaaacGCGGCcAGcuccuccuuGAGg -3'
miRNA:   3'- -GGGGCgGCCGGCGG---------CGCCGcUCu--------CUC- -5'
6689 3' -66.3 NC_001847.1 + 39398 0.66 0.460211
Target:  5'- gCCggCGCCGGCCggGCUccuccgaaaGCaGCGAGGGGGg -3'
miRNA:   3'- gGG--GCGGCCGG--CGG---------CGcCGCUCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 115963 0.66 0.451636
Target:  5'- aCCCCGCCc-CCGCCGUGcuGCGcGGGGu -3'
miRNA:   3'- -GGGGCGGccGGCGGCGC--CGCuCUCUc -5'
6689 3' -66.3 NC_001847.1 + 131944 0.66 0.443149
Target:  5'- gUgCGCCGGCgauggcggCGaCgGCGGCGAGAGcGGg -3'
miRNA:   3'- gGgGCGGCCG--------GC-GgCGCCGCUCUC-UC- -5'
6689 3' -66.3 NC_001847.1 + 3488 0.67 0.40132
Target:  5'- uCCCCGaCCGGCgGCaGCGGCGccgucacgcucccGGuGAu -3'
miRNA:   3'- -GGGGC-GGCCGgCGgCGCCGC-------------UCuCUc -5'
6689 3' -66.3 NC_001847.1 + 1730 0.67 0.402116
Target:  5'- gCCgCGCCgcGGCCaGCCGCGcGC-AGAGGu -3'
miRNA:   3'- -GGgGCGG--CCGG-CGGCGC-CGcUCUCUc -5'
6689 3' -66.3 NC_001847.1 + 29199 0.66 0.433918
Target:  5'- gCgCCGCCgGGCUcccggugcucucgGCCGCGGCGGGc--- -3'
miRNA:   3'- -GgGGCGG-CCGG-------------CGGCGCCGCUCucuc -5'
6689 3' -66.3 NC_001847.1 + 101576 0.66 0.42645
Target:  5'- aCCgCGCaCGGCCGCCuccGCGGCGu----- -3'
miRNA:   3'- -GGgGCG-GCCGGCGG---CGCCGCucucuc -5'
6689 3' -66.3 NC_001847.1 + 116969 0.67 0.418241
Target:  5'- gUCCGCCaugGGcCCGCUGgGGCGAGcGuGg -3'
miRNA:   3'- gGGGCGG---CC-GGCGGCgCCGCUCuCuC- -5'
6689 3' -66.3 NC_001847.1 + 53577 0.67 0.417425
Target:  5'- -gCCGCCGGCC-CCGCGcagcugcGCGGGGccggcGAGc -3'
miRNA:   3'- ggGGCGGCCGGcGGCGC-------CGCUCU-----CUC- -5'
6689 3' -66.3 NC_001847.1 + 129673 0.67 0.410129
Target:  5'- -gCCGCU-GCCGCCGCcGC-AGAGAGc -3'
miRNA:   3'- ggGGCGGcCGGCGGCGcCGcUCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 68826 0.67 0.410129
Target:  5'- aCCCGCCgcaGGgCGCCGCgaagagcucgGGCGcGAGGc -3'
miRNA:   3'- gGGGCGG---CCgGCGGCG----------CCGCuCUCUc -5'
6689 3' -66.3 NC_001847.1 + 11813 0.67 0.402116
Target:  5'- uUCCGUcagaCGGCacaGCgCGCGGgGGGGGGGg -3'
miRNA:   3'- gGGGCG----GCCGg--CG-GCGCCgCUCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 101645 0.67 0.402116
Target:  5'- gCCCGCCGccgcccgcgccGCCGCCGCGGacaucgccuCGaAGcGAGc -3'
miRNA:   3'- gGGGCGGC-----------CGGCGGCGCC---------GC-UCuCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.