miRNA display CGI


Results 81 - 100 of 487 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6689 3' -66.3 NC_001847.1 + 108762 0.66 0.42645
Target:  5'- gCCgCGCUGGgCGCCggacgcgccggGCGGCccacccGGGAGAGc -3'
miRNA:   3'- -GGgGCGGCCgGCGG-----------CGCCG------CUCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 31365 0.67 0.421513
Target:  5'- gCCCCGCCGGCCcggguGCCgGCGcagucguccccgggcGCGGGcucGGGc -3'
miRNA:   3'- -GGGGCGGCCGG-----CGG-CGC---------------CGCUCu--CUC- -5'
6689 3' -66.3 NC_001847.1 + 98793 0.67 0.418241
Target:  5'- gCgCCGCgUGGCgCGCCGCGGCGcgcGGcacGAGc -3'
miRNA:   3'- -GgGGCG-GCCG-GCGGCGCCGC---UCu--CUC- -5'
6689 3' -66.3 NC_001847.1 + 51892 0.67 0.415797
Target:  5'- gCCCCGCCGcgcuuucggccgccGCCccgGCCGCGGCGu----- -3'
miRNA:   3'- -GGGGCGGC--------------CGG---CGGCGCCGCucucuc -5'
6689 3' -66.3 NC_001847.1 + 109164 0.67 0.410129
Target:  5'- gCCagaGCCGGCCGCgCGCuuguucccaaGGCGucGGGGc -3'
miRNA:   3'- gGGg--CGGCCGGCG-GCG----------CCGCucUCUC- -5'
6689 3' -66.3 NC_001847.1 + 11813 0.67 0.402116
Target:  5'- uUCCGUcagaCGGCacaGCgCGCGGgGGGGGGGg -3'
miRNA:   3'- gGGGCG----GCCGg--CG-GCGCCgCUCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 101645 0.67 0.402116
Target:  5'- gCCCGCCGccgcccgcgccGCCGCCGCGGacaucgccuCGaAGcGAGc -3'
miRNA:   3'- gGGGCGGC-----------CGGCGGCGCC---------GC-UCuCUC- -5'
6689 3' -66.3 NC_001847.1 + 131944 0.66 0.443149
Target:  5'- gUgCGCCGGCgauggcggCGaCgGCGGCGAGAGcGGg -3'
miRNA:   3'- gGgGCGGCCG--------GC-GgCGCCGCUCUC-UC- -5'
6689 3' -66.3 NC_001847.1 + 115963 0.66 0.451636
Target:  5'- aCCCCGCCc-CCGCCGUGcuGCGcGGGGu -3'
miRNA:   3'- -GGGGCGGccGGCGGCGC--CGCuCUCUc -5'
6689 3' -66.3 NC_001847.1 + 39398 0.66 0.460211
Target:  5'- gCCggCGCCGGCCggGCUccuccgaaaGCaGCGAGGGGGg -3'
miRNA:   3'- gGG--GCGGCCGG--CGG---------CGcCGCUCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 2353 0.67 0.394203
Target:  5'- gCCgCGCCGGCCcgGCCGCgucGGCGGcGGcGg -3'
miRNA:   3'- -GGgGCGGCCGG--CGGCG---CCGCUcUCuC- -5'
6689 3' -66.3 NC_001847.1 + 99263 0.67 0.386392
Target:  5'- gCCgCCGCCGacuccagcuGCCGCCGCaGCGcGucGAGg -3'
miRNA:   3'- -GG-GGCGGC---------CGGCGGCGcCGCuCu-CUC- -5'
6689 3' -66.3 NC_001847.1 + 3885 0.67 0.378683
Target:  5'- gCCCGUCGcGCggCGCCGCGGCGuAGccAGc -3'
miRNA:   3'- gGGGCGGC-CG--GCGGCGCCGC-UCucUC- -5'
6689 3' -66.3 NC_001847.1 + 100742 0.68 0.371079
Target:  5'- cCCCCagcGCCGcGuCUGCCGCGGCGGcGGc- -3'
miRNA:   3'- -GGGG---CGGC-C-GGCGGCGCCGCUcUCuc -5'
6689 3' -66.3 NC_001847.1 + 27721 0.68 0.371079
Target:  5'- gCCCgCGCCgagcuGGCCgaGCUGUGGCGgauggugggcGGGGAGg -3'
miRNA:   3'- -GGG-GCGG-----CCGG--CGGCGCCGC----------UCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 95770 0.66 0.477615
Target:  5'- --gCGCgGGCCGCUcUGGCGcGGGGGg -3'
miRNA:   3'- gggGCGgCCGGCGGcGCCGCuCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 95689 0.66 0.477615
Target:  5'- --gCGCgGGCCGCUcUGGCGcGGGGGg -3'
miRNA:   3'- gggGCGgCCGGCGGcGCCGCuCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 1235 0.66 0.476737
Target:  5'- gCCCGCaggccagguacacCGGCCGCaGCGGCGcgccGAGc -3'
miRNA:   3'- gGGGCG-------------GCCGGCGgCGCCGCucu-CUC- -5'
6689 3' -66.3 NC_001847.1 + 116197 0.66 0.468872
Target:  5'- uCgCCGCCacggacGCCGCgGCGGCGcuGGAa -3'
miRNA:   3'- -GgGGCGGc-----CGGCGgCGCCGCucUCUc -5'
6689 3' -66.3 NC_001847.1 + 80070 0.66 0.460211
Target:  5'- cCCCCG-CGGCCGCCagcauaaacGCGGCcAGcuccuccuuGAGg -3'
miRNA:   3'- -GGGGCgGCCGGCGG---------CGCCGcUCu--------CUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.