miRNA display CGI


Results 101 - 120 of 487 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6689 3' -66.3 NC_001847.1 + 35981 0.67 0.378683
Target:  5'- cUCCCGCCGGCUGgCGCcacaaGGCGcGcGGAu -3'
miRNA:   3'- -GGGGCGGCCGGCgGCG-----CCGCuC-UCUc -5'
6689 3' -66.3 NC_001847.1 + 102024 0.68 0.371079
Target:  5'- gCUCGCC-GCCGCCGCGGuCGGccaGGAu -3'
miRNA:   3'- gGGGCGGcCGGCGGCGCC-GCUc--UCUc -5'
6689 3' -66.3 NC_001847.1 + 103277 0.68 0.363579
Target:  5'- gCUCCGCCGGCaGCaaCGcCGGCGAGcccGGGc -3'
miRNA:   3'- -GGGGCGGCCGgCG--GC-GCCGCUCu--CUC- -5'
6689 3' -66.3 NC_001847.1 + 6127 0.68 0.363579
Target:  5'- uCCCCGCUucCCGCCcaggaccccgGCGGUGAGcGAGc -3'
miRNA:   3'- -GGGGCGGccGGCGG----------CGCCGCUCuCUC- -5'
6689 3' -66.3 NC_001847.1 + 131376 0.68 0.356185
Target:  5'- aUCCCGCCcgGGCUGCuCGaCGGCGAcGAa-- -3'
miRNA:   3'- -GGGGCGG--CCGGCG-GC-GCCGCU-CUcuc -5'
6689 3' -66.3 NC_001847.1 + 51892 0.67 0.415797
Target:  5'- gCCCCGCCGcgcuuucggccgccGCCccgGCCGCGGCGu----- -3'
miRNA:   3'- -GGGGCGGC--------------CGG---CGGCGCCGCucucuc -5'
6689 3' -66.3 NC_001847.1 + 98793 0.67 0.418241
Target:  5'- gCgCCGCgUGGCgCGCCGCGGCGcgcGGcacGAGc -3'
miRNA:   3'- -GgGGCG-GCCG-GCGGCGCCGC---UCu--CUC- -5'
6689 3' -66.3 NC_001847.1 + 95770 0.66 0.477615
Target:  5'- --gCGCgGGCCGCUcUGGCGcGGGGGg -3'
miRNA:   3'- gggGCGgCCGGCGGcGCCGCuCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 95689 0.66 0.477615
Target:  5'- --gCGCgGGCCGCUcUGGCGcGGGGGg -3'
miRNA:   3'- gggGCGgCCGGCGGcGCCGCuCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 1235 0.66 0.476737
Target:  5'- gCCCGCaggccagguacacCGGCCGCaGCGGCGcgccGAGc -3'
miRNA:   3'- gGGGCG-------------GCCGGCGgCGCCGCucu-CUC- -5'
6689 3' -66.3 NC_001847.1 + 116197 0.66 0.468872
Target:  5'- uCgCCGCCacggacGCCGCgGCGGCGcuGGAa -3'
miRNA:   3'- -GgGGCGGc-----CGGCGgCGCCGCucUCUc -5'
6689 3' -66.3 NC_001847.1 + 80070 0.66 0.460211
Target:  5'- cCCCCG-CGGCCGCCagcauaaacGCGGCcAGcuccuccuuGAGg -3'
miRNA:   3'- -GGGGCgGCCGGCGG---------CGCCGcUCu--------CUC- -5'
6689 3' -66.3 NC_001847.1 + 39398 0.66 0.460211
Target:  5'- gCCggCGCCGGCCggGCUccuccgaaaGCaGCGAGGGGGg -3'
miRNA:   3'- gGG--GCGGCCGG--CGG---------CGcCGCUCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 115963 0.66 0.451636
Target:  5'- aCCCCGCCc-CCGCCGUGcuGCGcGGGGu -3'
miRNA:   3'- -GGGGCGGccGGCGGCGC--CGCuCUCUc -5'
6689 3' -66.3 NC_001847.1 + 131944 0.66 0.443149
Target:  5'- gUgCGCCGGCgauggcggCGaCgGCGGCGAGAGcGGg -3'
miRNA:   3'- gGgGCGGCCG--------GC-GgCGCCGCUCUC-UC- -5'
6689 3' -66.3 NC_001847.1 + 13924 0.66 0.434753
Target:  5'- --gCGCuCGGUgccgCGCCGCGGC-AGGGGGg -3'
miRNA:   3'- gggGCG-GCCG----GCGGCGCCGcUCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 32871 0.66 0.434753
Target:  5'- aCCUCa-CGGCgGCCGaCGGCGAGgccucGGGGg -3'
miRNA:   3'- -GGGGcgGCCGgCGGC-GCCGCUC-----UCUC- -5'
6689 3' -66.3 NC_001847.1 + 125501 0.66 0.434753
Target:  5'- gCCCgGCUgcucgagcggcgGGCCGgCGCGGCGGcGGGc -3'
miRNA:   3'- -GGGgCGG------------CCGGCgGCGCCGCUcUCUc -5'
6689 3' -66.3 NC_001847.1 + 108762 0.66 0.42645
Target:  5'- gCCgCGCUGGgCGCCggacgcgccggGCGGCccacccGGGAGAGc -3'
miRNA:   3'- -GGgGCGGCCgGCGG-----------CGCCG------CUCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 31365 0.67 0.421513
Target:  5'- gCCCCGCCGGCCcggguGCCgGCGcagucguccccgggcGCGGGcucGGGc -3'
miRNA:   3'- -GGGGCGGCCGG-----CGG-CGC---------------CGCUCu--CUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.