miRNA display CGI


Results 41 - 60 of 487 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6689 3' -66.3 NC_001847.1 + 131345 0.66 0.43142
Target:  5'- gCCgCCGcCCGGCCGCgugcgcuucggcggCGCGGgCGAcacccgcGAGGGc -3'
miRNA:   3'- -GG-GGC-GGCCGGCG--------------GCGCC-GCU-------CUCUC- -5'
6689 3' -66.3 NC_001847.1 + 36372 0.66 0.425624
Target:  5'- gCgCCGCCGcggcccgggcagcGCgCGCCGCGGCGAcGGuGc -3'
miRNA:   3'- -GgGGCGGC-------------CG-GCGGCGCCGCUcUCuC- -5'
6689 3' -66.3 NC_001847.1 + 83036 0.66 0.423977
Target:  5'- gCCCG-CGGCCgcuagugcgcuuggGCCGCGGCGcGGccgaAGAGc -3'
miRNA:   3'- gGGGCgGCCGG--------------CGGCGCCGC-UC----UCUC- -5'
6689 3' -66.3 NC_001847.1 + 107969 0.66 0.481134
Target:  5'- cCCaCCGCgCGuGCCuuuuuuuuguuuuaCCGCGGCGcGGGAGa -3'
miRNA:   3'- -GG-GGCG-GC-CGGc-------------GGCGCCGCuCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 39158 0.66 0.477615
Target:  5'- uCgCUGCCGGCCgcgcaGCCGCGGC-AGcGGc -3'
miRNA:   3'- -GgGGCGGCCGG-----CGGCGCCGcUCuCUc -5'
6689 3' -66.3 NC_001847.1 + 34396 0.66 0.451636
Target:  5'- -gCCGCC-GCCGCggcagaCGCGGCGcuGGGGg -3'
miRNA:   3'- ggGGCGGcCGGCG------GCGCCGCucUCUC- -5'
6689 3' -66.3 NC_001847.1 + 80691 0.66 0.443149
Target:  5'- gCgCCGgCGGCgGCUGCGGCuGGaAGAa -3'
miRNA:   3'- -GgGGCgGCCGgCGGCGCCGcUC-UCUc -5'
6689 3' -66.3 NC_001847.1 + 134049 0.66 0.434753
Target:  5'- gCgCCGCCcGCgGCCGCGGCGcccggcguGGAcuGGGa -3'
miRNA:   3'- -GgGGCGGcCGgCGGCGCCGC--------UCU--CUC- -5'
6689 3' -66.3 NC_001847.1 + 50060 0.66 0.451636
Target:  5'- -gCCGCgGGuCCGCgCGCGGCGcGGAcccGGGc -3'
miRNA:   3'- ggGGCGgCC-GGCG-GCGCCGC-UCU---CUC- -5'
6689 3' -66.3 NC_001847.1 + 132012 0.66 0.433918
Target:  5'- gCgCCGCCgGGCUcccggugcucucgGCCGCGGCGGGc--- -3'
miRNA:   3'- -GgGGCGG-CCGG-------------CGGCGCCGCUCucuc -5'
6689 3' -66.3 NC_001847.1 + 132863 0.66 0.456771
Target:  5'- gCCCCGCCGccgacggcggcuuCCGCCGCGuGCcgcccGGGGAc -3'
miRNA:   3'- -GGGGCGGCc------------GGCGGCGC-CGc----UCUCUc -5'
6689 3' -66.3 NC_001847.1 + 116428 0.66 0.451636
Target:  5'- gCCCGCUGGCgCuccCCGCGGCGcuGGcGg -3'
miRNA:   3'- gGGGCGGCCG-Gc--GGCGCCGCucUCuC- -5'
6689 3' -66.3 NC_001847.1 + 131958 0.66 0.443149
Target:  5'- -aCCGCUGcGCCGUCGCcugccgcgaGGCGcuGGAGg -3'
miRNA:   3'- ggGGCGGC-CGGCGGCG---------CCGCucUCUC- -5'
6689 3' -66.3 NC_001847.1 + 35244 0.66 0.443149
Target:  5'- -gCgGCCGGCgGgCgCGCGGCG-GAGAu -3'
miRNA:   3'- ggGgCGGCCGgC-G-GCGCCGCuCUCUc -5'
6689 3' -66.3 NC_001847.1 + 5156 0.66 0.481134
Target:  5'- cCCaCCGCgCGuGCCuuuuuuuuguuuuaCCGCGGCGcGGGAGa -3'
miRNA:   3'- -GG-GGCG-GC-CGGc-------------GGCGCCGCuCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 81435 0.66 0.477615
Target:  5'- gCCCCG-CGaGCCGCCGgCGGCGc----- -3'
miRNA:   3'- -GGGGCgGC-CGGCGGC-GCCGCucucuc -5'
6689 3' -66.3 NC_001847.1 + 5239 0.66 0.434753
Target:  5'- gCUCCGUgcaGGUCuCCGCGG-GGGAGGGg -3'
miRNA:   3'- -GGGGCGg--CCGGcGGCGCCgCUCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 4403 0.66 0.460211
Target:  5'- uCgCCGCCGucgacGCCGaCgGCGGCGAGcgcgcgccgcAGGGa -3'
miRNA:   3'- -GgGGCGGC-----CGGC-GgCGCCGCUC----------UCUC- -5'
6689 3' -66.3 NC_001847.1 + 65855 0.66 0.477615
Target:  5'- gUCCGCCcGCaCGCCGCGuaGAG-GAa -3'
miRNA:   3'- gGGGCGGcCG-GCGGCGCcgCUCuCUc -5'
6689 3' -66.3 NC_001847.1 + 134350 0.66 0.4628
Target:  5'- cCCCCGCCucgucggacgacgacGaggccggcGCCGCCgGCGGCGGGccggccucgcccuAGGGg -3'
miRNA:   3'- -GGGGCGG---------------C--------CGGCGG-CGCCGCUC-------------UCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.