miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6690 3' -56.5 NC_001847.1 + 126189 0.7 0.603782
Target:  5'- cGAGAuGAGGGuGGGGGcuGGGuGGgcGGAGc -3'
miRNA:   3'- -UUCU-CUUCCuCCCCU--UCC-CCuuCCUC- -5'
6690 3' -56.5 NC_001847.1 + 125595 0.76 0.291088
Target:  5'- cGAGGGAucGGGGGGAuGGGGAuGGGGg -3'
miRNA:   3'- -UUCUCUucCUCCCCUuCCCCUuCCUC- -5'
6690 3' -56.5 NC_001847.1 + 125560 0.69 0.697044
Target:  5'- gGGGGGAuGGGGGcgaGGGAucGGGGGGAuGGGGg -3'
miRNA:   3'- -UUCUCU-UCCUC---CCCU--UCCCCUU-CCUC- -5'
6690 3' -56.5 NC_001847.1 + 125529 0.74 0.417782
Target:  5'- cGAGGGAucGGGGGGAugGGGGcGAGGGAu -3'
miRNA:   3'- -UUCUCUucCUCCCCU--UCCC-CUUCCUc -5'
6690 3' -56.5 NC_001847.1 + 125485 0.74 0.417782
Target:  5'- cGAGGGAucGGGGGGAugGGGGcGAGGGAu -3'
miRNA:   3'- -UUCUCUucCUCCCCU--UCCC-CUUCCUc -5'
6690 3' -56.5 NC_001847.1 + 124384 0.73 0.47321
Target:  5'- gGGGAGAGGGcGGGaGAGGGGGccgcGGGGc -3'
miRNA:   3'- -UUCUCUUCCuCCC-CUUCCCCuu--CCUC- -5'
6690 3' -56.5 NC_001847.1 + 124194 0.8 0.177037
Target:  5'- nGGGGAGGGAGGGGAaggAGGGGAuucgggccggccgAGGAu -3'
miRNA:   3'- uUCUCUUCCUCCCCU---UCCCCU-------------UCCUc -5'
6690 3' -56.5 NC_001847.1 + 124166 0.98 0.011483
Target:  5'- gAGGGGAAGGAGGGGAgggAGGGGAAGGAGg -3'
miRNA:   3'- -UUCUCUUCCUCCCCU---UCCCCUUCCUC- -5'
6690 3' -56.5 NC_001847.1 + 124130 0.98 0.011483
Target:  5'- gAGGGGAAGGAGGGGAgggAGGGGAAGGAGg -3'
miRNA:   3'- -UUCUCUUCCUCCCCU---UCCCCUUCCUC- -5'
6690 3' -56.5 NC_001847.1 + 124094 0.98 0.011483
Target:  5'- gAGGGGAAGGAGGGGAgggAGGGGAAGGAGg -3'
miRNA:   3'- -UUCUCUUCCUCCCCU---UCCCCUUCCUC- -5'
6690 3' -56.5 NC_001847.1 + 124058 0.98 0.011483
Target:  5'- gAGGGGAAGGAGGGGAgggAGGGGAAGGAGg -3'
miRNA:   3'- -UUCUCUUCCUCCCCU---UCCCCUUCCUC- -5'
6690 3' -56.5 NC_001847.1 + 124022 0.98 0.011483
Target:  5'- gAGGGGAAGGAGGGGAgggAGGGGAAGGAGg -3'
miRNA:   3'- -UUCUCUUCCUCCCCU---UCCCCUUCCUC- -5'
6690 3' -56.5 NC_001847.1 + 123986 0.98 0.011483
Target:  5'- gAGGGGAAGGAGGGGAgggAGGGGAAGGAGg -3'
miRNA:   3'- -UUCUCUUCCUCCCCU---UCCCCUUCCUC- -5'
6690 3' -56.5 NC_001847.1 + 119638 0.66 0.83882
Target:  5'- gGGGAGAccgAGGAcGGGGcAGccGGGcGGGAGg -3'
miRNA:   3'- -UUCUCU---UCCU-CCCCuUC--CCCuUCCUC- -5'
6690 3' -56.5 NC_001847.1 + 114046 0.8 0.182089
Target:  5'- cGGGcGGAcGGGGGGGAGGGGGgAAGGGGa -3'
miRNA:   3'- -UUC-UCUuCCUCCCCUUCCCC-UUCCUC- -5'
6690 3' -56.5 NC_001847.1 + 113688 0.78 0.25198
Target:  5'- cGGGGcGGGAgGGGGAAGGGGGAgccGGAGc -3'
miRNA:   3'- uUCUCuUCCU-CCCCUUCCCCUU---CCUC- -5'
6690 3' -56.5 NC_001847.1 + 113129 0.81 0.15202
Target:  5'- gAGGAGGacgAGGAGGcGGAcgaggAGGGGGAGGAGa -3'
miRNA:   3'- -UUCUCU---UCCUCC-CCU-----UCCCCUUCCUC- -5'
6690 3' -56.5 NC_001847.1 + 111806 0.67 0.785692
Target:  5'- cAGAcGggGGuGGGGGcuGGGuGGgcGGAGc -3'
miRNA:   3'- uUCU-CuuCCuCCCCU--UCC-CCuuCCUC- -5'
6690 3' -56.5 NC_001847.1 + 111417 0.74 0.400201
Target:  5'- cAGGGgcGGcgcucggccGGGGGcGGGGGGAGGAGc -3'
miRNA:   3'- uUCUCuuCC---------UCCCCuUCCCCUUCCUC- -5'
6690 3' -56.5 NC_001847.1 + 110435 0.73 0.435825
Target:  5'- uGGGGggGuGGGuGGGggGGuGGAGGGAc -3'
miRNA:   3'- uUCUCuuC-CUC-CCCuuCC-CCUUCCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.