miRNA display CGI


Results 41 - 60 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6690 3' -56.5 NC_001847.1 + 21571 0.73 0.47321
Target:  5'- gGGGAGAGGGcGGGaGAGGGGGccgcGGGGc -3'
miRNA:   3'- -UUCUCUUCCuCCC-CUUCCCCuu--CCUC- -5'
6690 3' -56.5 NC_001847.1 + 76722 0.73 0.463709
Target:  5'- -cGGGAAGGAcGGucGGgcGGGGAAGGAc -3'
miRNA:   3'- uuCUCUUCCU-CC--CCuuCCCCUUCCUc -5'
6690 3' -56.5 NC_001847.1 + 15099 0.73 0.454309
Target:  5'- uAGGAGcaAAGGGGGcGGucGGGGGAGGGc -3'
miRNA:   3'- -UUCUC--UUCCUCC-CCuuCCCCUUCCUc -5'
6690 3' -56.5 NC_001847.1 + 7622 0.73 0.435825
Target:  5'- uGGGGggGuGGGuGGGggGGuGGAGGGAc -3'
miRNA:   3'- uUCUCuuC-CUC-CCCuuCC-CCUUCCUc -5'
6690 3' -56.5 NC_001847.1 + 110435 0.73 0.435825
Target:  5'- uGGGGggGuGGGuGGGggGGuGGAGGGAc -3'
miRNA:   3'- uUCUCuuC-CUC-CCCuuCC-CCUUCCUc -5'
6690 3' -56.5 NC_001847.1 + 22672 0.74 0.417782
Target:  5'- cGAGGGAucGGGGGGAugGGGGcGAGGGAu -3'
miRNA:   3'- -UUCUCUucCUCCCCU--UCCC-CUUCCUc -5'
6690 3' -56.5 NC_001847.1 + 125485 0.74 0.417782
Target:  5'- cGAGGGAucGGGGGGAugGGGGcGAGGGAu -3'
miRNA:   3'- -UUCUCUucCUCCCCU--UCCC-CUUCCUc -5'
6690 3' -56.5 NC_001847.1 + 125529 0.74 0.417782
Target:  5'- cGAGGGAucGGGGGGAugGGGGcGAGGGAu -3'
miRNA:   3'- -UUCUCUucCUCCCCU--UCCC-CUUCCUc -5'
6690 3' -56.5 NC_001847.1 + 22716 0.74 0.417782
Target:  5'- cGAGGGAucGGGGGGAugGGGGcGAGGGAu -3'
miRNA:   3'- -UUCUCUucCUCCCCU--UCCC-CUUCCUc -5'
6690 3' -56.5 NC_001847.1 + 111417 0.74 0.400201
Target:  5'- cAGGGgcGGcgcucggccGGGGGcGGGGGGAGGAGc -3'
miRNA:   3'- uUCUCuuCC---------UCCCCuUCCCCUUCCUC- -5'
6690 3' -56.5 NC_001847.1 + 8604 0.74 0.400201
Target:  5'- cAGGGgcGGcgcucggccGGGGGcGGGGGGAGGAGc -3'
miRNA:   3'- uUCUCuuCC---------UCCCCuUCCCCUUCCUC- -5'
6690 3' -56.5 NC_001847.1 + 33816 0.74 0.3831
Target:  5'- cAGAGAagagGGGAGGGGAGcGGGcuuGGGAGu -3'
miRNA:   3'- uUCUCU----UCCUCCCCUUcCCCu--UCCUC- -5'
6690 3' -56.5 NC_001847.1 + 68056 0.74 0.3831
Target:  5'- -cGAaGGGGAGGGaGAAGGGGAAgcuGGAGc -3'
miRNA:   3'- uuCUcUUCCUCCC-CUUCCCCUU---CCUC- -5'
6690 3' -56.5 NC_001847.1 + 29674 0.75 0.374733
Target:  5'- cGAGGcGGAGGAcGGGGAGGacGGGGAGGAc -3'
miRNA:   3'- -UUCU-CUUCCU-CCCCUUC--CCCUUCCUc -5'
6690 3' -56.5 NC_001847.1 + 129266 0.75 0.374733
Target:  5'- -cGAGGcAGGGGcGGGAAuGGGGAGGGGa -3'
miRNA:   3'- uuCUCU-UCCUC-CCCUU-CCCCUUCCUc -5'
6690 3' -56.5 NC_001847.1 + 132487 0.75 0.374733
Target:  5'- cGAGGcGGAGGAcGGGGAGGacGGGGAGGAc -3'
miRNA:   3'- -UUCU-CUUCCU-CCCCUUC--CCCUUCCUc -5'
6690 3' -56.5 NC_001847.1 + 26453 0.75 0.374733
Target:  5'- -cGAGGcAGGGGcGGGAAuGGGGAGGGGa -3'
miRNA:   3'- uuCUCU-UCCUC-CCCUU-CCCCUUCCUc -5'
6690 3' -56.5 NC_001847.1 + 88324 0.75 0.366492
Target:  5'- gAAGAGGAGGAcgaggGGGGAgaagaagacgGGGGGAacgAGGGGc -3'
miRNA:   3'- -UUCUCUUCCU-----CCCCU----------UCCCCU---UCCUC- -5'
6690 3' -56.5 NC_001847.1 + 134900 0.75 0.334789
Target:  5'- gGAGcGAGGGAGGaGGAgcgAGGGaGGAGGAGc -3'
miRNA:   3'- -UUCuCUUCCUCC-CCU---UCCC-CUUCCUC- -5'
6690 3' -56.5 NC_001847.1 + 32068 0.75 0.334789
Target:  5'- cGGAGAcggcGGGGgccGGGGAagauuGGGGGGAGGGGg -3'
miRNA:   3'- uUCUCU----UCCU---CCCCU-----UCCCCUUCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.