miRNA display CGI


Results 41 - 60 of 559 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6690 5' -67.8 NC_001847.1 + 16224 0.66 0.345895
Target:  5'- uGCaGCC-UCCGCgUCCCGGCCUcgGCCc -3'
miRNA:   3'- gUGaCGGcGGGCG-AGGGCCGGG--CGGc -5'
6690 5' -67.8 NC_001847.1 + 95306 0.66 0.364975
Target:  5'- gGCUGgCGCgCGCcacgcaggaagcgCUCgGGCCCGCCGc -3'
miRNA:   3'- gUGACgGCGgGCGa------------GGG-CCGGGCGGC- -5'
6690 5' -67.8 NC_001847.1 + 87442 0.66 0.345895
Target:  5'- aGCUGCUGCgCgCGCUCaaCGGCcCCGCgGc -3'
miRNA:   3'- gUGACGGCG-G-GCGAGg-GCCG-GGCGgC- -5'
6690 5' -67.8 NC_001847.1 + 134682 0.66 0.353148
Target:  5'- uGCUGCCGCcgCCGC-CgCCGcCgCCGCCGc -3'
miRNA:   3'- gUGACGGCG--GGCGaG-GGCcG-GGCGGC- -5'
6690 5' -67.8 NC_001847.1 + 64133 0.66 0.367974
Target:  5'- gCGCgGCCGCCguacUGgaCaugCGGCCCGCCa -3'
miRNA:   3'- -GUGaCGGCGG----GCgaGg--GCCGGGCGGc -5'
6690 5' -67.8 NC_001847.1 + 38770 0.66 0.360507
Target:  5'- uGCcGCCGCCgGC-CCCGccauuGCcaCCGCCGg -3'
miRNA:   3'- gUGaCGGCGGgCGaGGGC-----CG--GGCGGC- -5'
6690 5' -67.8 NC_001847.1 + 9559 0.66 0.360507
Target:  5'- gCGCUGCagccguccaGCCCGCcgCCCGcGgCCGCg- -3'
miRNA:   3'- -GUGACGg--------CGGGCGa-GGGC-CgGGCGgc -5'
6690 5' -67.8 NC_001847.1 + 63141 0.66 0.353148
Target:  5'- gGCUGUgGCaCCGgaUCCCGGCgCGCa- -3'
miRNA:   3'- gUGACGgCG-GGCg-AGGGCCGgGCGgc -5'
6690 5' -67.8 NC_001847.1 + 38808 0.66 0.345895
Target:  5'- cCAUUGCCGCCg----CCGGcCCCGCCa -3'
miRNA:   3'- -GUGACGGCGGgcgagGGCC-GGGCGGc -5'
6690 5' -67.8 NC_001847.1 + 71835 0.66 0.360507
Target:  5'- gCGCUGaaccaCGCgCUGCUggCCCGGUgcuuCCGCCGc -3'
miRNA:   3'- -GUGACg----GCG-GGCGA--GGGCCG----GGCGGC- -5'
6690 5' -67.8 NC_001847.1 + 60980 0.66 0.367974
Target:  5'- cCGCUG-CGCgCGC-CCaCGGCgCCGUCGa -3'
miRNA:   3'- -GUGACgGCGgGCGaGG-GCCG-GGCGGC- -5'
6690 5' -67.8 NC_001847.1 + 44656 0.66 0.366472
Target:  5'- gGCUGCUGcCCCGCcugcaccgugaCCGGCgaGCCGc -3'
miRNA:   3'- gUGACGGC-GGGCGag---------GGCCGggCGGC- -5'
6690 5' -67.8 NC_001847.1 + 69639 0.66 0.391001
Target:  5'- gCACUGCgCGCgCCGC-CCCacaccgcgccauGGaCCGCCa -3'
miRNA:   3'- -GUGACG-GCG-GGCGaGGG------------CCgGGCGGc -5'
6690 5' -67.8 NC_001847.1 + 134254 0.66 0.383221
Target:  5'- gGCgGCCGCggCgGC-CCCGGCgcgggCCGCCGc -3'
miRNA:   3'- gUGaCGGCG--GgCGaGGGCCG-----GGCGGC- -5'
6690 5' -67.8 NC_001847.1 + 128986 0.66 0.383221
Target:  5'- aAUUGCCGCgC-CUCCCuGCUCGCUc -3'
miRNA:   3'- gUGACGGCGgGcGAGGGcCGGGCGGc -5'
6690 5' -67.8 NC_001847.1 + 87321 0.66 0.391001
Target:  5'- gCAUUgGCCGCCgGCaUCCCGuCCCcggugucgGCCGa -3'
miRNA:   3'- -GUGA-CGGCGGgCG-AGGGCcGGG--------CGGC- -5'
6690 5' -67.8 NC_001847.1 + 82934 0.66 0.360507
Target:  5'- uCGCUGUCGaggCCGCgacCCgCGGCCagGCCGc -3'
miRNA:   3'- -GUGACGGCg--GGCGa--GG-GCCGGg-CGGC- -5'
6690 5' -67.8 NC_001847.1 + 134158 0.66 0.378603
Target:  5'- uGCcGCCGCCgGCggcggaagccccgCCGGCCCggguGCCGg -3'
miRNA:   3'- gUGaCGGCGGgCGag-----------GGCCGGG----CGGC- -5'
6690 5' -67.8 NC_001847.1 + 14358 0.66 0.391001
Target:  5'- uGCUGCCgacGCUCGCagaugCCaCGGCCgCgGCCGu -3'
miRNA:   3'- gUGACGG---CGGGCGa----GG-GCCGG-G-CGGC- -5'
6690 5' -67.8 NC_001847.1 + 77071 0.66 0.383221
Target:  5'- cCGCUGCgGCgCGCgcgcgcgCCaaucggCGGCCCGCgCGc -3'
miRNA:   3'- -GUGACGgCGgGCGa------GG------GCCGGGCG-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.