miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
670 5' -57.5 AC_000018.1 + 12722 1.1 0.000267
Target:  5'- gCGCUGGAACCGCUCGCGCUGAGACACg -3'
miRNA:   3'- -GCGACCUUGGCGAGCGCGACUCUGUG- -5'
670 5' -57.5 AC_000018.1 + 11070 0.7 0.246257
Target:  5'- gGCUGGGcggguGCCGCUCGgGCgaugGugcgcccAGGCGCg -3'
miRNA:   3'- gCGACCU-----UGGCGAGCgCGa---C-------UCUGUG- -5'
670 5' -57.5 AC_000018.1 + 13289 0.69 0.287939
Target:  5'- uGCaGGAgggggcgacaccuACCGC-CGCGCUG-GACAUg -3'
miRNA:   3'- gCGaCCU-------------UGGCGaGCGCGACuCUGUG- -5'
670 5' -57.5 AC_000018.1 + 16448 0.68 0.327573
Target:  5'- gCGCUuGGACauaCUUGcCGCUGGGACACa -3'
miRNA:   3'- -GCGAcCUUGgc-GAGC-GCGACUCUGUG- -5'
670 5' -57.5 AC_000018.1 + 23150 0.68 0.344182
Target:  5'- aCGCUuGuACUGCUCGUGCUGcucuGGCAUc -3'
miRNA:   3'- -GCGAcCuUGGCGAGCGCGACu---CUGUG- -5'
670 5' -57.5 AC_000018.1 + 11338 0.67 0.378281
Target:  5'- cCGCgGGuGCCGCUCGgGCgaugGugcgcccAGGCGCg -3'
miRNA:   3'- -GCGaCCuUGGCGAGCgCGa---C-------UCUGUG- -5'
670 5' -57.5 AC_000018.1 + 11598 0.67 0.416495
Target:  5'- gCGCUccuccuucacGGu-CUGCUCGUagGCUGAGACAg -3'
miRNA:   3'- -GCGA----------CCuuGGCGAGCG--CGACUCUGUg -5'
670 5' -57.5 AC_000018.1 + 8107 0.66 0.445906
Target:  5'- uGCUGacGAGCC-CUCGCGg-GAGGCAa -3'
miRNA:   3'- gCGAC--CUUGGcGAGCGCgaCUCUGUg -5'
670 5' -57.5 AC_000018.1 + 10489 0.66 0.455964
Target:  5'- gGCUGGAGCCGCagcuaaCGUGgUacuGGCACu -3'
miRNA:   3'- gCGACCUUGGCGa-----GCGCgAcu-CUGUG- -5'
670 5' -57.5 AC_000018.1 + 17374 0.66 0.455964
Target:  5'- uGC-GGAgaguguACCGCgauggUCGCGCUGAaccucuGACGCu -3'
miRNA:   3'- gCGaCCU------UGGCG-----AGCGCGACU------CUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.