miRNA display CGI


Results 1 - 4 of 4 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6703 5' -48.2 NC_001868.1 + 430 0.67 0.209336
Target:  5'- uCCCGgcGGACAgCUAGCAgAgACACcgACCg -3'
miRNA:   3'- -GGGU--UUUGUgGGUUGUgUgUGUG--UGG- -5'
6703 5' -48.2 NC_001868.1 + 1813 0.72 0.079584
Target:  5'- aUCCAGAACAuCCCAGgGCACAggaaacagucucugUACAUCc -3'
miRNA:   3'- -GGGUUUUGU-GGGUUgUGUGU--------------GUGUGG- -5'
6703 5' -48.2 NC_001868.1 + 99 0.75 0.048925
Target:  5'- aUCCAAAGCGCCUuACuACAUACAgGCUu -3'
miRNA:   3'- -GGGUUUUGUGGGuUG-UGUGUGUgUGG- -5'
6703 5' -48.2 NC_001868.1 + 1348 1.14 0.000026
Target:  5'- uCCCAAAACACCCAACACACACACACCc -3'
miRNA:   3'- -GGGUUUUGUGGGUUGUGUGUGUGUGG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.