miRNA: 3'- -UCGUG-GCCGGuUCACGACCaC-UCUCA- -5'
miRNA: 3'- -UCGUG-GCCGGuUCACGACCaC-UCUCA- -5'
miRNA: 3'- -UCGUGGCCGGUUCACGACCACUCUCA- -5'
miRNA: 3'- -UCGUGGCCGGUUCACGACCACUCUCA- -5'
Results 1 - 4 of 4 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 6708 | 3' | -57.7 | NC_001870.1 | + | 95 | 0.73 | 0.041555 |
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Target: 5'- cAGCACuUGGCC-GGUGCUGG-GcAGAGUg -3' miRNA: 3'- -UCGUG-GCCGGuUCACGACCaC-UCUCA- -5' |
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| 6708 | 3' | -57.7 | NC_001870.1 | + | 9909 | 0.73 | 0.041555 |
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Target: 5'- cAGCACuUGGCC-GGUGCUGG-GcAGAGUg -3' miRNA: 3'- -UCGUG-GCCGGuUCACGACCaC-UCUCA- -5' |
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| 6708 | 3' | -57.7 | NC_001870.1 | + | 122 | 1.06 | 0.000058 |
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Target: 5'- cAGCACCGGCCAAGUGCUGGUGAGAGUc -3' miRNA: 3'- -UCGUGGCCGGUUCACGACCACUCUCA- -5' |
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| 6708 | 3' | -57.7 | NC_001870.1 | + | 9936 | 1.06 | 0.000058 |
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Target: 5'- cAGCACCGGCCAAGUGCUGGUGAGAGUc -3' miRNA: 3'- -UCGUGGCCGGUUCACGACCACUCUCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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