Results 1 - 3 of 3 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6723 | 5' | -43.6 | NC_001874.1 | + | 3302 | 0.66 | 0.84574 |
Target: 5'- uUAAAGCUUGugCAggUGCUGCAa-- -3' miRNA: 3'- uGUUUUGAACugGUggAUGAUGUaau -5' |
|||||||
6723 | 5' | -43.6 | NC_001874.1 | + | 5834 | 0.71 | 0.584989 |
Target: 5'- gACGAAuauCUUGACUACUUACgGCGUUu -3' miRNA: 3'- -UGUUUu--GAACUGGUGGAUGaUGUAAu -5' |
|||||||
6723 | 5' | -43.6 | NC_001874.1 | + | 5838 | 1.08 | 0.00211 |
Target: 5'- aACAAAACUUGACCACCUACUACAUUAc -3' miRNA: 3'- -UGUUUUGAACUGGUGGAUGAUGUAAU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home