miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6727 3' -60.1 NC_001875.2 + 98410 0.68 0.57885
Target:  5'- gCGGACGuuGUGUUucaagcGGACgaGcGCCAGCu -3'
miRNA:   3'- -GCCUGCucCACGA------CCUGgaC-CGGUCG- -5'
6727 3' -60.1 NC_001875.2 + 19346 0.66 0.718298
Target:  5'- uGGGCGuGGUGCgcGGAgCguUGGCCGa- -3'
miRNA:   3'- gCCUGCuCCACGa-CCUgG--ACCGGUcg -5'
6727 3' -60.1 NC_001875.2 + 16227 0.66 0.708529
Target:  5'- uCGGGCGAGuGUGaCUGcggcGACgaGGCCGucacGCg -3'
miRNA:   3'- -GCCUGCUC-CAC-GAC----CUGgaCCGGU----CG- -5'
6727 3' -60.1 NC_001875.2 + 109169 0.66 0.688814
Target:  5'- --aACGAGGUGCUcaGCCUGGUCAc- -3'
miRNA:   3'- gccUGCUCCACGAccUGGACCGGUcg -5'
6727 3' -60.1 NC_001875.2 + 68260 0.66 0.678883
Target:  5'- -cGACGuGGUGCUGcucGugUUGGCCAu- -3'
miRNA:   3'- gcCUGCuCCACGAC---CugGACCGGUcg -5'
6727 3' -60.1 NC_001875.2 + 72591 0.67 0.65792
Target:  5'- gCGGGCGcugcGGGcGCuUGGGCCUccagguuguuuacGGCCuGCg -3'
miRNA:   3'- -GCCUGC----UCCaCG-ACCUGGA-------------CCGGuCG- -5'
6727 3' -60.1 NC_001875.2 + 111880 0.67 0.648905
Target:  5'- aCGG-CGAGGcgccgGCcGGACCgugcGcGCCGGCc -3'
miRNA:   3'- -GCCuGCUCCa----CGaCCUGGa---C-CGGUCG- -5'
6727 3' -60.1 NC_001875.2 + 49521 0.67 0.648905
Target:  5'- gCGGaccGCGAccagucgcuGGUGCUGGACUUGgggcccgacGCCAGa -3'
miRNA:   3'- -GCC---UGCU---------CCACGACCUGGAC---------CGGUCg -5'
6727 3' -60.1 NC_001875.2 + 47489 0.67 0.61881
Target:  5'- uCGGGCGAccaaaaugcaGUGCUGGAugcauCCUcGGCgAGCg -3'
miRNA:   3'- -GCCUGCUc---------CACGACCU-----GGA-CCGgUCG- -5'
6727 3' -60.1 NC_001875.2 + 52461 0.68 0.608788
Target:  5'- -cGACGAGGaGCuguuUGGGCUguccGGCCAGUu -3'
miRNA:   3'- gcCUGCUCCaCG----ACCUGGa---CCGGUCG- -5'
6727 3' -60.1 NC_001875.2 + 20428 0.68 0.588801
Target:  5'- uGGcCGAGGUGCaGGAaaaUUGcGaCCAGCg -3'
miRNA:   3'- gCCuGCUCCACGaCCUg--GAC-C-GGUCG- -5'
6727 3' -60.1 NC_001875.2 + 22904 0.7 0.463864
Target:  5'- cCGG-UGAuGUGCUGGagcgguGCgUGGCCGGCg -3'
miRNA:   3'- -GCCuGCUcCACGACC------UGgACCGGUCG- -5'
6727 3' -60.1 NC_001875.2 + 20402 0.7 0.454795
Target:  5'- uGGugGGGcUGUUGGGCCauuccGGCCuGCg -3'
miRNA:   3'- gCCugCUCcACGACCUGGa----CCGGuCG- -5'
6727 3' -60.1 NC_001875.2 + 40949 0.7 0.445823
Target:  5'- uGGAUGugguGGUGCUGGGCac-GCgCAGCa -3'
miRNA:   3'- gCCUGCu---CCACGACCUGgacCG-GUCG- -5'
6727 3' -60.1 NC_001875.2 + 112875 0.71 0.402509
Target:  5'- -cGACGAGGccacGCucgUGGGCCaagcgcUGGCCAGCa -3'
miRNA:   3'- gcCUGCUCCa---CG---ACCUGG------ACCGGUCG- -5'
6727 3' -60.1 NC_001875.2 + 57420 0.72 0.36984
Target:  5'- uCGGACGAcuuugaGGUGCUGGACCccuCCAcGCu -3'
miRNA:   3'- -GCCUGCU------CCACGACCUGGaccGGU-CG- -5'
6727 3' -60.1 NC_001875.2 + 112519 0.72 0.36984
Target:  5'- uCGGGCGcuGGUGCUGGcgGCUcGGgCAGCu -3'
miRNA:   3'- -GCCUGCu-CCACGACC--UGGaCCgGUCG- -5'
6727 3' -60.1 NC_001875.2 + 105835 0.73 0.339031
Target:  5'- aCGGGCGcGGUGUgUGGG--UGGCCGGCa -3'
miRNA:   3'- -GCCUGCuCCACG-ACCUggACCGGUCG- -5'
6727 3' -60.1 NC_001875.2 + 45330 0.78 0.158838
Target:  5'- -cGACGAccucaacgcGGUGCUGGAgacguaCCUGGCCAGUa -3'
miRNA:   3'- gcCUGCU---------CCACGACCU------GGACCGGUCG- -5'
6727 3' -60.1 NC_001875.2 + 88255 0.66 0.727996
Target:  5'- aCGGGCGuuG-GCUGG-CUUGGCUgcuGCg -3'
miRNA:   3'- -GCCUGCucCaCGACCuGGACCGGu--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.