miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6727 3' -60.1 NC_001875.2 + 88255 0.66 0.727996
Target:  5'- aCGGGCGuuG-GCUGG-CUUGGCUgcuGCg -3'
miRNA:   3'- -GCCUGCucCaCGACCuGGACCGGu--CG- -5'
6727 3' -60.1 NC_001875.2 + 88354 0.68 0.608788
Target:  5'- aCGGACGAGGUGUcguaGCUgucGGgCAGCg -3'
miRNA:   3'- -GCCUGCUCCACGacc-UGGa--CCgGUCG- -5'
6727 3' -60.1 NC_001875.2 + 98410 0.68 0.57885
Target:  5'- gCGGACGuuGUGUUucaagcGGACgaGcGCCAGCu -3'
miRNA:   3'- -GCCUGCucCACGA------CCUGgaC-CGGUCG- -5'
6727 3' -60.1 NC_001875.2 + 105835 0.73 0.339031
Target:  5'- aCGGGCGcGGUGUgUGGG--UGGCCGGCa -3'
miRNA:   3'- -GCCUGCuCCACG-ACCUggACCGGUCG- -5'
6727 3' -60.1 NC_001875.2 + 105895 0.68 0.588801
Target:  5'- uGGGCGAGGaGCUcaucGACCagugGGgCAGCg -3'
miRNA:   3'- gCCUGCUCCaCGAc---CUGGa---CCgGUCG- -5'
6727 3' -60.1 NC_001875.2 + 109169 0.66 0.688814
Target:  5'- --aACGAGGUGCUcaGCCUGGUCAc- -3'
miRNA:   3'- gccUGCUCCACGAccUGGACCGGUcg -5'
6727 3' -60.1 NC_001875.2 + 109415 0.68 0.568935
Target:  5'- cCGGGCGcGGcGCguuGGCC-GGCCGGCu -3'
miRNA:   3'- -GCCUGCuCCaCGac-CUGGaCCGGUCG- -5'
6727 3' -60.1 NC_001875.2 + 111880 0.67 0.648905
Target:  5'- aCGG-CGAGGcgccgGCcGGACCgugcGcGCCGGCc -3'
miRNA:   3'- -GCCuGCUCCa----CGaCCUGGa---C-CGGUCG- -5'
6727 3' -60.1 NC_001875.2 + 112519 0.72 0.36984
Target:  5'- uCGGGCGcuGGUGCUGGcgGCUcGGgCAGCu -3'
miRNA:   3'- -GCCUGCu-CCACGACC--UGGaCCgGUCG- -5'
6727 3' -60.1 NC_001875.2 + 112875 0.71 0.402509
Target:  5'- -cGACGAGGccacGCucgUGGGCCaagcgcUGGCCAGCa -3'
miRNA:   3'- gcCUGCUCCa---CG---ACCUGG------ACCGGUCG- -5'
6727 3' -60.1 NC_001875.2 + 117345 0.67 0.668917
Target:  5'- -cGACGAGGUGCcGG-CCUGcaGCCAc- -3'
miRNA:   3'- gcCUGCUCCACGaCCuGGAC--CGGUcg -5'
6727 3' -60.1 NC_001875.2 + 118661 0.67 0.647902
Target:  5'- uGaACGAGGUGCUgcacgccGGACacuUGGCguGCg -3'
miRNA:   3'- gCcUGCUCCACGA-------CCUGg--ACCGguCG- -5'
6727 3' -60.1 NC_001875.2 + 128889 0.66 0.718298
Target:  5'- gGGGCGcGGcucgcgGCgcaGACCUGGgCGGCg -3'
miRNA:   3'- gCCUGCuCCa-----CGac-CUGGACCgGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.