miRNA display CGI


Results 41 - 60 of 249 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6727 5' -56.3 NC_001875.2 + 66815 0.66 0.862024
Target:  5'- uACGCCGGCAGcgaguugagcacaaACGACGGCUgaaagauguuaaaguCCGCCc -3'
miRNA:   3'- -UGCGGUCGUUa-------------UGUUGCUGG---------------GGCGGc -5'
6727 5' -56.3 NC_001875.2 + 42280 0.66 0.855834
Target:  5'- uUGCUAGCAucgagauCAGCgGACUgCGCCGg -3'
miRNA:   3'- uGCGGUCGUuau----GUUG-CUGGgGCGGC- -5'
6727 5' -56.3 NC_001875.2 + 35133 0.66 0.855834
Target:  5'- gGCGCCacuucuagcgGGCGGUcCAGCuGCCCCGUgGc -3'
miRNA:   3'- -UGCGG----------UCGUUAuGUUGcUGGGGCGgC- -5'
6727 5' -56.3 NC_001875.2 + 128701 0.66 0.855834
Target:  5'- gACGCC-GCGuccgcGCAGCgGGCUUCGCCGc -3'
miRNA:   3'- -UGCGGuCGUua---UGUUG-CUGGGGCGGC- -5'
6727 5' -56.3 NC_001875.2 + 26768 0.66 0.855834
Target:  5'- uCGCCguAGCAcucGUugAGCGACgCgCCGUCGa -3'
miRNA:   3'- uGCGG--UCGU---UAugUUGCUG-G-GGCGGC- -5'
6727 5' -56.3 NC_001875.2 + 23976 0.66 0.855834
Target:  5'- cCGCCAGaGAcACGGCGcGCCCgaCGCCGc -3'
miRNA:   3'- uGCGGUCgUUaUGUUGC-UGGG--GCGGC- -5'
6727 5' -56.3 NC_001875.2 + 35489 0.66 0.851105
Target:  5'- uGCGCCAGCAAcgagccgacguauuuUGCGgccaaguaugacGCGGCCacggugcuggCCGCCc -3'
miRNA:   3'- -UGCGGUCGUU---------------AUGU------------UGCUGG----------GGCGGc -5'
6727 5' -56.3 NC_001875.2 + 43282 0.66 0.847912
Target:  5'- -aGCCuGCAGUggaugcGCGGCGGCUCCaaccuGCCGc -3'
miRNA:   3'- ugCGGuCGUUA------UGUUGCUGGGG-----CGGC- -5'
6727 5' -56.3 NC_001875.2 + 38710 0.66 0.847912
Target:  5'- cACGCCGcGcCGAcGCAGCaACCCgGCCa -3'
miRNA:   3'- -UGCGGU-C-GUUaUGUUGcUGGGgCGGc -5'
6727 5' -56.3 NC_001875.2 + 91401 0.66 0.847912
Target:  5'- uGCGCCAGCGgcagcucgcaAUugAugGGCCgcagcUCGCUGu -3'
miRNA:   3'- -UGCGGUCGU----------UAugUugCUGG-----GGCGGC- -5'
6727 5' -56.3 NC_001875.2 + 7561 0.66 0.847912
Target:  5'- gACGCCGGCGG-ACgAGCGGCaCCC-CUGu -3'
miRNA:   3'- -UGCGGUCGUUaUG-UUGCUG-GGGcGGC- -5'
6727 5' -56.3 NC_001875.2 + 87981 0.66 0.847912
Target:  5'- aACGCCcGC-GUAC-GCGACgCCCGCg- -3'
miRNA:   3'- -UGCGGuCGuUAUGuUGCUG-GGGCGgc -5'
6727 5' -56.3 NC_001875.2 + 29988 0.67 0.839791
Target:  5'- cGCGgCGGCGGUggacuGCAGCGugCCguugacccaugCGCCGc -3'
miRNA:   3'- -UGCgGUCGUUA-----UGUUGCugGG-----------GCGGC- -5'
6727 5' -56.3 NC_001875.2 + 59263 0.67 0.839791
Target:  5'- cGCGUCGGC----CAGCGACgCCGUCa -3'
miRNA:   3'- -UGCGGUCGuuauGUUGCUGgGGCGGc -5'
6727 5' -56.3 NC_001875.2 + 113527 0.67 0.839791
Target:  5'- cGCGCCgcugaccgGGCAAUgagcgACGACGACCUggaggcaaucguCGCCu -3'
miRNA:   3'- -UGCGG--------UCGUUA-----UGUUGCUGGG------------GCGGc -5'
6727 5' -56.3 NC_001875.2 + 102576 0.67 0.839791
Target:  5'- gGCGCuCGGCA--ACGGCGAgCgcgaCGCCGa -3'
miRNA:   3'- -UGCG-GUCGUuaUGUUGCUgGg---GCGGC- -5'
6727 5' -56.3 NC_001875.2 + 48854 0.67 0.839791
Target:  5'- cCGCCGGCGAcg-AGCGGCgCCGCg- -3'
miRNA:   3'- uGCGGUCGUUaugUUGCUGgGGCGgc -5'
6727 5' -56.3 NC_001875.2 + 54394 0.67 0.839791
Target:  5'- cCGCCAGUuGUGgAACGGCUCguccaUGCCGc -3'
miRNA:   3'- uGCGGUCGuUAUgUUGCUGGG-----GCGGC- -5'
6727 5' -56.3 NC_001875.2 + 51064 0.67 0.839791
Target:  5'- -aGCCucGGCAuagacUACGACGGgCCCGUCa -3'
miRNA:   3'- ugCGG--UCGUu----AUGUUGCUgGGGCGGc -5'
6727 5' -56.3 NC_001875.2 + 39320 0.67 0.837317
Target:  5'- gUGCCGGCGGcgugcgcgcgcUGCAGgcgcagccugacgcUGACgCCCGCCGu -3'
miRNA:   3'- uGCGGUCGUU-----------AUGUU--------------GCUG-GGGCGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.