miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6728 3' -46.6 NC_001875.2 + 36447 0.66 0.999829
Target:  5'- cUUGAgGUGGcUGCGGCGcauuggcgcuccGUUGUGCa- -3'
miRNA:   3'- cAAUUaUAUC-ACGCCGU------------CAACACGcu -5'
6728 3' -46.6 NC_001875.2 + 126994 0.66 0.999636
Target:  5'- --------uGUGCGGCAcUUGUGCa- -3'
miRNA:   3'- caauuauauCACGCCGUcAACACGcu -5'
6728 3' -46.6 NC_001875.2 + 11875 0.66 0.999539
Target:  5'- --cAGUuu-GUGCGGCagcgcguguuagAGUUGUGCGc -3'
miRNA:   3'- caaUUAuauCACGCCG------------UCAACACGCu -5'
6728 3' -46.6 NC_001875.2 + 28996 0.66 0.999539
Target:  5'- -gUGGUGgcGUGCGGCAaGUgcgcUGCGGg -3'
miRNA:   3'- caAUUAUauCACGCCGU-CAac--ACGCU- -5'
6728 3' -46.6 NC_001875.2 + 109117 0.68 0.998341
Target:  5'- --gGGUAUAGgcggcgacgGCGGCGGUcuUG-GCGAc -3'
miRNA:   3'- caaUUAUAUCa--------CGCCGUCA--ACaCGCU- -5'
6728 3' -46.6 NC_001875.2 + 97140 0.68 0.99758
Target:  5'- uUUGAUAacUGGUGCcagGGCuGUUGUGUGc -3'
miRNA:   3'- cAAUUAU--AUCACG---CCGuCAACACGCu -5'
6728 3' -46.6 NC_001875.2 + 554 0.69 0.996549
Target:  5'- --gGAUGUAGccgGUGGC-GUUGUGCa- -3'
miRNA:   3'- caaUUAUAUCa--CGCCGuCAACACGcu -5'
6728 3' -46.6 NC_001875.2 + 58270 0.69 0.99518
Target:  5'- gGUUGGUcgggagGUGGcUGCGGCGGUUGUuGgGGc -3'
miRNA:   3'- -CAAUUA------UAUC-ACGCCGUCAACA-CgCU- -5'
6728 3' -46.6 NC_001875.2 + 13994 0.69 0.994346
Target:  5'- uUUGAccUGGUgGUGGCGGUUGaGCGAa -3'
miRNA:   3'- cAAUUauAUCA-CGCCGUCAACaCGCU- -5'
6728 3' -46.6 NC_001875.2 + 831 0.7 0.988277
Target:  5'- -----gGUGGUGgGGCGGUgGUGCa- -3'
miRNA:   3'- caauuaUAUCACgCCGUCAaCACGcu -5'
6728 3' -46.6 NC_001875.2 + 66296 0.72 0.969411
Target:  5'- --aGGUGUGGUGCGuGUAcaUUGUGCGAc -3'
miRNA:   3'- caaUUAUAUCACGC-CGUc-AACACGCU- -5'
6728 3' -46.6 NC_001875.2 + 40214 0.72 0.966047
Target:  5'- -----cGUAGUGCGGCGuGUUGU-CGAg -3'
miRNA:   3'- caauuaUAUCACGCCGU-CAACAcGCU- -5'
6728 3' -46.6 NC_001875.2 + 17427 0.75 0.882924
Target:  5'- -------cAGUGCGGCGGaUUGUGCGc -3'
miRNA:   3'- caauuauaUCACGCCGUC-AACACGCu -5'
6728 3' -46.6 NC_001875.2 + 749 1.1 0.016493
Target:  5'- gGUUAAUAUAGUGCGGCAGUUGUGCGAc -3'
miRNA:   3'- -CAAUUAUAUCACGCCGUCAACACGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.