Results 41 - 60 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
6729 | 3' | -62.8 | NC_001875.2 | + | 45077 | 0.67 | 0.531963 |
Target: 5'- aGGCGCUGaaGCGCCgccuagagugcgaGGGCgagCCGCCa -3' miRNA: 3'- gUUGCGACa-CGCGGag-----------CCCGg--GGCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 55328 | 0.67 | 0.537691 |
Target: 5'- gCGACGgUGaugacGCGCCgcuucggGGGCgCCGCCu -3' miRNA: 3'- -GUUGCgACa----CGCGGag-----CCCGgGGCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 41451 | 0.67 | 0.528157 |
Target: 5'- aCAACGCguuuaGCGCCaUCGacgaGCCCgGCCu -3' miRNA: 3'- -GUUGCGaca--CGCGG-AGCc---CGGGgCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 5924 | 0.67 | 0.528157 |
Target: 5'- uGGCGUUGgguaGCGCCgcgcaggUGGGCgCgGCCu -3' miRNA: 3'- gUUGCGACa---CGCGGa------GCCCGgGgCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 85222 | 0.67 | 0.51963 |
Target: 5'- -cGCGCgGUaGCGCCgcaugucgacgagcgCGGGUUCCGCg -3' miRNA: 3'- guUGCGaCA-CGCGGa--------------GCCCGGGGCGg -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 39068 | 0.67 | 0.518686 |
Target: 5'- gCAugGCcauUGUGCGCCgCGGcGUCgUGCUg -3' miRNA: 3'- -GUugCG---ACACGCGGaGCC-CGGgGCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 62351 | 0.67 | 0.528157 |
Target: 5'- gGGCGCg--GCGCCaguUUGGGUCgCgCGCCa -3' miRNA: 3'- gUUGCGacaCGCGG---AGCCCGG-G-GCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 52448 | 0.67 | 0.517742 |
Target: 5'- aAAUGgUGUGCGCCgacgaggagcuguUUGGGCuguCCgGCCa -3' miRNA: 3'- gUUGCgACACGCGG-------------AGCCCG---GGgCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 72557 | 0.67 | 0.499952 |
Target: 5'- gGGCGCUGcggGCGCgggcgCGGGCgCUGCg -3' miRNA: 3'- gUUGCGACa--CGCGga---GCCCGgGGCGg -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 70922 | 0.67 | 0.481524 |
Target: 5'- ---aGCgGUGCGUCagCGccGGCCCCGCUu -3' miRNA: 3'- guugCGaCACGCGGa-GC--CCGGGGCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 49532 | 0.67 | 0.528157 |
Target: 5'- cCAGuCGCUG-GUGCUggacuUgGGGCCCgaCGCCa -3' miRNA: 3'- -GUU-GCGACaCGCGG-----AgCCCGGG--GCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 122107 | 0.66 | 0.576362 |
Target: 5'- gGACGCUcaacacGUGCcacGCUUCGGGCgCgGCg -3' miRNA: 3'- gUUGCGA------CACG---CGGAGCCCGgGgCGg -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 40239 | 0.66 | 0.595942 |
Target: 5'- uGGCGCgucaGCGCCgc-GGCCUCGUCg -3' miRNA: 3'- gUUGCGaca-CGCGGagcCCGGGGCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 120682 | 0.66 | 0.566625 |
Target: 5'- --cUGCUGUGCGCCaUCGa--CCgGCCg -3' miRNA: 3'- guuGCGACACGCGG-AGCccgGGgCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 90401 | 0.66 | 0.566625 |
Target: 5'- cCGGCGcCUGUGCGCgCgcaGcGGCCCCuGUUu -3' miRNA: 3'- -GUUGC-GACACGCG-Gag-C-CCGGGG-CGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 31919 | 0.66 | 0.566625 |
Target: 5'- -cGCGCUGcaccGCGCg-CGGGC-CCGCUc -3' miRNA: 3'- guUGCGACa---CGCGgaGCCCGgGGCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 68704 | 0.66 | 0.576362 |
Target: 5'- gGAC-CcGUGCGCCggccgCGcGCCCgGCCg -3' miRNA: 3'- gUUGcGaCACGCGGa----GCcCGGGgCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 10865 | 0.66 | 0.586137 |
Target: 5'- aCGACGCgGUGgcCGCgUCGguGGCgCUGCCg -3' miRNA: 3'- -GUUGCGaCAC--GCGgAGC--CCGgGGCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 109878 | 0.66 | 0.595942 |
Target: 5'- uGGCGCUG-GCGCCgcccauCCCCGCg -3' miRNA: 3'- gUUGCGACaCGCGGagccc-GGGGCGg -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 62556 | 0.66 | 0.595942 |
Target: 5'- aAACGUUGUGCGgg-UGGacuuGCCgCCGCCa -3' miRNA: 3'- gUUGCGACACGCggaGCC----CGG-GGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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