Results 61 - 69 of 69 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 6729 | 3' | -62.8 | NC_001875.2 | + | 110503 | 0.73 | 0.231988 |
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Target: 5'- aCGGCGCUGcuCGUCaacaaggCGGGCCCCGCg -3' miRNA: 3'- -GUUGCGACacGCGGa------GCCCGGGGCGg -5' |
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| 6729 | 3' | -62.8 | NC_001875.2 | + | 112517 | 0.68 | 0.472435 |
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Target: 5'- gGGCGCUGgugcugGCGgCUCGGGCagcuCCuCCu -3' miRNA: 3'- gUUGCGACa-----CGCgGAGCCCGg---GGcGG- -5' |
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| 6729 | 3' | -62.8 | NC_001875.2 | + | 120682 | 0.66 | 0.566625 |
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Target: 5'- --cUGCUGUGCGCCaUCGa--CCgGCCg -3' miRNA: 3'- guuGCGACACGCGG-AGCccgGGgCGG- -5' |
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| 6729 | 3' | -62.8 | NC_001875.2 | + | 122107 | 0.66 | 0.576362 |
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Target: 5'- gGACGCUcaacacGUGCcacGCUUCGGGCgCgGCg -3' miRNA: 3'- gUUGCGA------CACG---CGGAGCCCGgGgCGg -5' |
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| 6729 | 3' | -62.8 | NC_001875.2 | + | 124719 | 0.67 | 0.509283 |
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Target: 5'- aAACGgUGUGcCGCCaaagCGa-CCCCGCCg -3' miRNA: 3'- gUUGCgACAC-GCGGa---GCccGGGGCGG- -5' |
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| 6729 | 3' | -62.8 | NC_001875.2 | + | 128699 | 0.69 | 0.403106 |
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Target: 5'- cCGACGCcgcGUccGCGCagCGGGCUUCGCCg -3' miRNA: 3'- -GUUGCGa--CA--CGCGgaGCCCGGGGCGG- -5' |
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| 6729 | 3' | -62.8 | NC_001875.2 | + | 129332 | 0.67 | 0.481524 |
|
Target: 5'- gCGGCGCcGgcgGCGCCUgGGGCaacugcggCGCCu -3' miRNA: 3'- -GUUGCGaCa--CGCGGAgCCCGgg------GCGG- -5' |
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| 6729 | 3' | -62.8 | NC_001875.2 | + | 130615 | 0.66 | 0.595942 |
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Target: 5'- aCGGCGCgugcuagcgGUGCGUCagCGGcGCCCUGgUg -3' miRNA: 3'- -GUUGCGa--------CACGCGGa-GCC-CGGGGCgG- -5' |
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| 6729 | 3' | -62.8 | NC_001875.2 | + | 131502 | 0.66 | 0.586137 |
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Target: 5'- -cACGUUGUGCGCCUguuuuUGGcGCUCCa-- -3' miRNA: 3'- guUGCGACACGCGGA-----GCC-CGGGGcgg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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