Results 61 - 69 of 69 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 6729 | 3' | -62.8 | NC_001875.2 | + | 56625 | 0.69 | 0.378818 |
|
Target: 5'- uGGCGCUGaccaacacGCGCg-CGGaCCCCGCCa -3' miRNA: 3'- gUUGCGACa-------CGCGgaGCCcGGGGCGG- -5' |
|||||||
| 6729 | 3' | -62.8 | NC_001875.2 | + | 19823 | 0.69 | 0.386804 |
|
Target: 5'- uCAACGCUGUG-GUCcUGGGCa-CGCCa -3' miRNA: 3'- -GUUGCGACACgCGGaGCCCGggGCGG- -5' |
|||||||
| 6729 | 3' | -62.8 | NC_001875.2 | + | 74182 | 0.69 | 0.394901 |
|
Target: 5'- uUAGCGCggcaaucuUGUGCGCCgCGGuGCUcucguaccgguCCGCCg -3' miRNA: 3'- -GUUGCG--------ACACGCGGaGCC-CGG-----------GGCGG- -5' |
|||||||
| 6729 | 3' | -62.8 | NC_001875.2 | + | 89116 | 0.69 | 0.403106 |
|
Target: 5'- --uCGUUGcagGUGUUUgGGGUCCCGCCg -3' miRNA: 3'- guuGCGACa--CGCGGAgCCCGGGGCGG- -5' |
|||||||
| 6729 | 3' | -62.8 | NC_001875.2 | + | 54609 | 0.69 | 0.403106 |
|
Target: 5'- -cACGCUGUGCGgCgcCGcGGCUaacgaCCGCCa -3' miRNA: 3'- guUGCGACACGCgGa-GC-CCGG-----GGCGG- -5' |
|||||||
| 6729 | 3' | -62.8 | NC_001875.2 | + | 67594 | 0.68 | 0.428358 |
|
Target: 5'- aGACGCUGU-UGCU--GGGCUCCGUCa -3' miRNA: 3'- gUUGCGACAcGCGGagCCCGGGGCGG- -5' |
|||||||
| 6729 | 3' | -62.8 | NC_001875.2 | + | 39218 | 0.68 | 0.428358 |
|
Target: 5'- gCGGCGCacaaUGgccaUGCGCUUgCGGuacagcGCCCCGCCg -3' miRNA: 3'- -GUUGCG----AC----ACGCGGA-GCC------CGGGGCGG- -5' |
|||||||
| 6729 | 3' | -62.8 | NC_001875.2 | + | 17085 | 0.68 | 0.454521 |
|
Target: 5'- gCAACGCgccgaUGCGCUcaaacaCGaGGCCCgCGCCg -3' miRNA: 3'- -GUUGCGac---ACGCGGa-----GC-CCGGG-GCGG- -5' |
|||||||
| 6729 | 3' | -62.8 | NC_001875.2 | + | 1192 | 1.11 | 0.000446 |
|
Target: 5'- cCAACGCUGUGCGCCUCGGGCCCCGCCa -3' miRNA: 3'- -GUUGCGACACGCGGAGCCCGGGGCGG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home