miRNA display CGI


Results 1 - 20 of 36 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6729 5' -56.8 NC_001875.2 + 1156 1.08 0.002282
Target:  5'- aAGAACGGGCCCGCAGCAAUGGCGUUGu -3'
miRNA:   3'- -UCUUGCCCGGGCGUCGUUACCGCAAC- -5'
6729 5' -56.8 NC_001875.2 + 39173 0.76 0.312203
Target:  5'- -aGGCGGGCCgGCGGUugcGUGGCGUUu -3'
miRNA:   3'- ucUUGCCCGGgCGUCGu--UACCGCAAc -5'
6729 5' -56.8 NC_001875.2 + 1010 0.73 0.462816
Target:  5'- --uGCGGGCCCGUucuuGCAgcgcGUGGCGggGc -3'
miRNA:   3'- ucuUGCCCGGGCGu---CGU----UACCGCaaC- -5'
6729 5' -56.8 NC_001875.2 + 30866 0.72 0.520898
Target:  5'- ---cCGcGGCCUGCAGCGcgGGCGcUUGc -3'
miRNA:   3'- ucuuGC-CCGGGCGUCGUuaCCGC-AAC- -5'
6729 5' -56.8 NC_001875.2 + 45742 0.71 0.530865
Target:  5'- cGGAGuCGGGCCCGCuGGacuUGGCGgcGa -3'
miRNA:   3'- -UCUU-GCCCGGGCG-UCguuACCGCaaC- -5'
6729 5' -56.8 NC_001875.2 + 32078 0.71 0.561154
Target:  5'- cGAGCGGGCCgCGCGcGCGGUGcagcGCGg-- -3'
miRNA:   3'- uCUUGCCCGG-GCGU-CGUUAC----CGCaac -5'
6729 5' -56.8 NC_001875.2 + 41017 0.71 0.571359
Target:  5'- cAGGAUGGcGCCCGCGGUgcgcgucuUGGCGa-- -3'
miRNA:   3'- -UCUUGCC-CGGGCGUCGuu------ACCGCaac -5'
6729 5' -56.8 NC_001875.2 + 32793 0.71 0.571359
Target:  5'- uGGGCGGGCgCCGCgccGGCAAgcucGGCGa-- -3'
miRNA:   3'- uCUUGCCCG-GGCG---UCGUUa---CCGCaac -5'
6729 5' -56.8 NC_001875.2 + 128890 0.7 0.581609
Target:  5'- cGGGGCGcGGCUCGCGGCGcagaccugGGCGgcGa -3'
miRNA:   3'- -UCUUGC-CCGGGCGUCGUua------CCGCaaC- -5'
6729 5' -56.8 NC_001875.2 + 79131 0.7 0.608414
Target:  5'- -cGGCGGGCgCCGCGGCGGgcucguuugccacGGCGUg- -3'
miRNA:   3'- ucUUGCCCG-GGCGUCGUUa------------CCGCAac -5'
6729 5' -56.8 NC_001875.2 + 42045 0.7 0.633269
Target:  5'- --cGCGGGCauggCGCGGCGAcaGGUGUUGg -3'
miRNA:   3'- ucuUGCCCGg---GCGUCGUUa-CCGCAAC- -5'
6729 5' -56.8 NC_001875.2 + 38219 0.69 0.673594
Target:  5'- cGAACGGG-CgGCAGCGcaaaaaguggaugAUGGCGUc- -3'
miRNA:   3'- uCUUGCCCgGgCGUCGU-------------UACCGCAac -5'
6729 5' -56.8 NC_001875.2 + 37328 0.69 0.674623
Target:  5'- -aAAUGGGCCagcgCGCGGCAcgGGUGcUGg -3'
miRNA:   3'- ucUUGCCCGG----GCGUCGUuaCCGCaAC- -5'
6729 5' -56.8 NC_001875.2 + 33309 0.69 0.684894
Target:  5'- --uGCGGGUUgGCgAGCGcGUGGCGUUGc -3'
miRNA:   3'- ucuUGCCCGGgCG-UCGU-UACCGCAAC- -5'
6729 5' -56.8 NC_001875.2 + 85477 0.69 0.684894
Target:  5'- cGGGCGGggcgagagcGCCCGCGGCAAUGcccGCGc-- -3'
miRNA:   3'- uCUUGCC---------CGGGCGUCGUUAC---CGCaac -5'
6729 5' -56.8 NC_001875.2 + 90913 0.68 0.705294
Target:  5'- -uGACGGGCaCGCAGCcugcGGUGGUGaUGg -3'
miRNA:   3'- ucUUGCCCGgGCGUCG----UUACCGCaAC- -5'
6729 5' -56.8 NC_001875.2 + 84315 0.68 0.714396
Target:  5'- uAGuAGCGGcGCCUGCGGUAcccggagcggcgaGUGGCGg-- -3'
miRNA:   3'- -UC-UUGCC-CGGGCGUCGU-------------UACCGCaac -5'
6729 5' -56.8 NC_001875.2 + 21704 0.68 0.725441
Target:  5'- --cGCGcGGCCCGCGGUAAgcguGCGUUu -3'
miRNA:   3'- ucuUGC-CCGGGCGUCGUUac--CGCAAc -5'
6729 5' -56.8 NC_001875.2 + 113615 0.68 0.725441
Target:  5'- -cGGCGGGCCgCgGCGGCAAgagcGGCGa-- -3'
miRNA:   3'- ucUUGCCCGG-G-CGUCGUUa---CCGCaac -5'
6729 5' -56.8 NC_001875.2 + 72553 0.67 0.755018
Target:  5'- -cAACGGGCgCUGCgGGCGcgGGCGcgGg -3'
miRNA:   3'- ucUUGCCCG-GGCG-UCGUuaCCGCaaC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.