Results 21 - 36 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6729 | 5' | -56.8 | NC_001875.2 | + | 90913 | 0.68 | 0.705294 |
Target: 5'- -uGACGGGCaCGCAGCcugcGGUGGUGaUGg -3' miRNA: 3'- ucUUGCCCGgGCGUCG----UUACCGCaAC- -5' |
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6729 | 5' | -56.8 | NC_001875.2 | + | 33309 | 0.69 | 0.684894 |
Target: 5'- --uGCGGGUUgGCgAGCGcGUGGCGUUGc -3' miRNA: 3'- ucuUGCCCGGgCG-UCGU-UACCGCAAC- -5' |
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6729 | 5' | -56.8 | NC_001875.2 | + | 85477 | 0.69 | 0.684894 |
Target: 5'- cGGGCGGggcgagagcGCCCGCGGCAAUGcccGCGc-- -3' miRNA: 3'- uCUUGCC---------CGGGCGUCGUUAC---CGCaac -5' |
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6729 | 5' | -56.8 | NC_001875.2 | + | 37328 | 0.69 | 0.674623 |
Target: 5'- -aAAUGGGCCagcgCGCGGCAcgGGUGcUGg -3' miRNA: 3'- ucUUGCCCGG----GCGUCGUuaCCGCaAC- -5' |
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6729 | 5' | -56.8 | NC_001875.2 | + | 38219 | 0.69 | 0.673594 |
Target: 5'- cGAACGGG-CgGCAGCGcaaaaaguggaugAUGGCGUc- -3' miRNA: 3'- uCUUGCCCgGgCGUCGU-------------UACCGCAac -5' |
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6729 | 5' | -56.8 | NC_001875.2 | + | 42045 | 0.7 | 0.633269 |
Target: 5'- --cGCGGGCauggCGCGGCGAcaGGUGUUGg -3' miRNA: 3'- ucuUGCCCGg---GCGUCGUUa-CCGCAAC- -5' |
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6729 | 5' | -56.8 | NC_001875.2 | + | 79131 | 0.7 | 0.608414 |
Target: 5'- -cGGCGGGCgCCGCGGCGGgcucguuugccacGGCGUg- -3' miRNA: 3'- ucUUGCCCG-GGCGUCGUUa------------CCGCAac -5' |
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6729 | 5' | -56.8 | NC_001875.2 | + | 128890 | 0.7 | 0.581609 |
Target: 5'- cGGGGCGcGGCUCGCGGCGcagaccugGGCGgcGa -3' miRNA: 3'- -UCUUGC-CCGGGCGUCGUua------CCGCaaC- -5' |
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6729 | 5' | -56.8 | NC_001875.2 | + | 41017 | 0.71 | 0.571359 |
Target: 5'- cAGGAUGGcGCCCGCGGUgcgcgucuUGGCGa-- -3' miRNA: 3'- -UCUUGCC-CGGGCGUCGuu------ACCGCaac -5' |
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6729 | 5' | -56.8 | NC_001875.2 | + | 32793 | 0.71 | 0.571359 |
Target: 5'- uGGGCGGGCgCCGCgccGGCAAgcucGGCGa-- -3' miRNA: 3'- uCUUGCCCG-GGCG---UCGUUa---CCGCaac -5' |
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6729 | 5' | -56.8 | NC_001875.2 | + | 32078 | 0.71 | 0.561154 |
Target: 5'- cGAGCGGGCCgCGCGcGCGGUGcagcGCGg-- -3' miRNA: 3'- uCUUGCCCGG-GCGU-CGUUAC----CGCaac -5' |
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6729 | 5' | -56.8 | NC_001875.2 | + | 45742 | 0.71 | 0.530865 |
Target: 5'- cGGAGuCGGGCCCGCuGGacuUGGCGgcGa -3' miRNA: 3'- -UCUU-GCCCGGGCG-UCguuACCGCaaC- -5' |
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6729 | 5' | -56.8 | NC_001875.2 | + | 30866 | 0.72 | 0.520898 |
Target: 5'- ---cCGcGGCCUGCAGCGcgGGCGcUUGc -3' miRNA: 3'- ucuuGC-CCGGGCGUCGUuaCCGC-AAC- -5' |
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6729 | 5' | -56.8 | NC_001875.2 | + | 1010 | 0.73 | 0.462816 |
Target: 5'- --uGCGGGCCCGUucuuGCAgcgcGUGGCGggGc -3' miRNA: 3'- ucuUGCCCGGGCGu---CGU----UACCGCaaC- -5' |
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6729 | 5' | -56.8 | NC_001875.2 | + | 39173 | 0.76 | 0.312203 |
Target: 5'- -aGGCGGGCCgGCGGUugcGUGGCGUUu -3' miRNA: 3'- ucUUGCCCGGgCGUCGu--UACCGCAAc -5' |
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6729 | 5' | -56.8 | NC_001875.2 | + | 1156 | 1.08 | 0.002282 |
Target: 5'- aAGAACGGGCCCGCAGCAAUGGCGUUGu -3' miRNA: 3'- -UCUUGCCCGGGCGUCGUUACCGCAAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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