miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
673 3' -62.1 AC_000018.1 + 16576 0.7 0.153318
Target:  5'- cGGCGcGUGCagugGCGCGGGCGCaaaGUGCg- -3'
miRNA:   3'- cCCGCuCACG----CGUGCCCGUG---CGCGac -5'
673 3' -62.1 AC_000018.1 + 10979 0.69 0.157529
Target:  5'- aGGGCGAGggacugGCGCGCcuGGGCGCaccauCGCc- -3'
miRNA:   3'- -CCCGCUCa-----CGCGUG--CCCGUGc----GCGac -5'
673 3' -62.1 AC_000018.1 + 11251 0.69 0.157529
Target:  5'- aGGGCGAGggacugGCGCGCcuGGGCGCaccauCGCc- -3'
miRNA:   3'- -CCCGCUCa-----CGCGUG--CCCGUGc----GCGac -5'
673 3' -62.1 AC_000018.1 + 8493 0.66 0.25294
Target:  5'- cGGCGcc-GCGCGCGGGUAgGUuCUGg -3'
miRNA:   3'- cCCGCucaCGCGUGCCCGUgCGcGAC- -5'
673 3' -62.1 AC_000018.1 + 15736 0.68 0.195129
Target:  5'- cGGCGucugGCGUcaguaACGGuCACGCGCUGg -3'
miRNA:   3'- cCCGCuca-CGCG-----UGCCcGUGCGCGAC- -5'
673 3' -62.1 AC_000018.1 + 11324 0.7 0.149209
Target:  5'- cGGGCGAugGUGCGCcCaGGCGCGC-Ca- -3'
miRNA:   3'- -CCCGCU--CACGCGuGcCCGUGCGcGac -5'
673 3' -62.1 AC_000018.1 + 11067 0.76 0.049391
Target:  5'- uGGGCGGGUGcCGCuCGGGCgauggugcgcccagGCGCGCc- -3'
miRNA:   3'- -CCCGCUCAC-GCGuGCCCG--------------UGCGCGac -5'
673 3' -62.1 AC_000018.1 + 16382 1.1 0.000104
Target:  5'- gGGGCGAGUGCGCACGGGCACGCGCUGg -3'
miRNA:   3'- -CCCGCUCACGCGUGCCCGUGCGCGAC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.