miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
673 5' -50.6 AC_000018.1 + 26872 0.66 0.861917
Target:  5'- cGGCGggaaUCACGuCACCCuugGCACcuguccuUUGCc -3'
miRNA:   3'- -CCGU----AGUGC-GUGGGucaUGUGu------AACG- -5'
673 5' -50.6 AC_000018.1 + 21771 0.66 0.834544
Target:  5'- gGGC-UCcUGCGCCgCAGUGC-CcUUGCu -3'
miRNA:   3'- -CCGuAGuGCGUGG-GUCAUGuGuAACG- -5'
673 5' -50.6 AC_000018.1 + 10034 0.66 0.824921
Target:  5'- --uGUCugGUGCCCAGgGCGCAcgaGCu -3'
miRNA:   3'- ccgUAGugCGUGGGUCaUGUGUaa-CG- -5'
673 5' -50.6 AC_000018.1 + 5199 0.66 0.824921
Target:  5'- gGGU---GCGCGCCUGGUuggGCGC-UUGCg -3'
miRNA:   3'- -CCGuagUGCGUGGGUCA---UGUGuAACG- -5'
673 5' -50.6 AC_000018.1 + 10291 0.66 0.824921
Target:  5'- cGCGUaCGCGguUCCAGauguUGCGCAgcgGCa -3'
miRNA:   3'- cCGUA-GUGCguGGGUC----AUGUGUaa-CG- -5'
673 5' -50.6 AC_000018.1 + 10108 0.67 0.773588
Target:  5'- uGCAggUGCGCACCaGGUACugGUaGCc -3'
miRNA:   3'- cCGUa-GUGCGUGGgUCAUGugUAaCG- -5'
673 5' -50.6 AC_000018.1 + 10120 0.67 0.762769
Target:  5'- cGCAUacuCGCGCCUcaAGUACACcgagcucgUGCg -3'
miRNA:   3'- cCGUAgu-GCGUGGG--UCAUGUGua------ACG- -5'
673 5' -50.6 AC_000018.1 + 24483 0.68 0.751797
Target:  5'- gGGCAUCgGCGCGggUgCGGUugGCGcgGCa -3'
miRNA:   3'- -CCGUAG-UGCGU--GgGUCAugUGUaaCG- -5'
673 5' -50.6 AC_000018.1 + 10171 0.68 0.706663
Target:  5'- cGGCuaccaGUACCUGGUGCGCAccUGCa -3'
miRNA:   3'- -CCGuagugCGUGGGUCAUGUGUa-ACG- -5'
673 5' -50.6 AC_000018.1 + 12696 0.69 0.683541
Target:  5'- cGGCcUCGCGCACaucggucaccauCCuGUccagguugguuuGCACGUUGCu -3'
miRNA:   3'- -CCGuAGUGCGUG------------GGuCA------------UGUGUAACG- -5'
673 5' -50.6 AC_000018.1 + 16317 0.69 0.660196
Target:  5'- cGGCcagCGCGUGCCC-GUGCGCAcucGCc -3'
miRNA:   3'- -CCGua-GUGCGUGGGuCAUGUGUaa-CG- -5'
673 5' -50.6 AC_000018.1 + 12082 0.69 0.648472
Target:  5'- uGGCGcUCAC-CGCgCGGUGCAuccuguCAUUGCg -3'
miRNA:   3'- -CCGU-AGUGcGUGgGUCAUGU------GUAACG- -5'
673 5' -50.6 AC_000018.1 + 5444 0.7 0.624986
Target:  5'- uGCAUC-CGCACCgCAGgagGCGCAgacgGUu -3'
miRNA:   3'- cCGUAGuGCGUGG-GUCa--UGUGUaa--CG- -5'
673 5' -50.6 AC_000018.1 + 15850 0.7 0.609729
Target:  5'- aGGCGccCGCaaacgcucuacccaGCACCCuGUGCGCGUUcGCg -3'
miRNA:   3'- -CCGUa-GUG--------------CGUGGGuCAUGUGUAA-CG- -5'
673 5' -50.6 AC_000018.1 + 22975 0.78 0.224391
Target:  5'- uGCAUCcaugagcccacagaGCGCACCCGGUGCACucccaacuAUUGUg -3'
miRNA:   3'- cCGUAG--------------UGCGUGGGUCAUGUG--------UAACG- -5'
673 5' -50.6 AC_000018.1 + 16347 1.14 0.000793
Target:  5'- uGGCAUCACGCACCCAGUACACAUUGCc -3'
miRNA:   3'- -CCGUAGUGCGUGGGUCAUGUGUAACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.