miRNA display CGI


Results 21 - 37 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6730 3' -54 NC_001875.2 + 111798 0.68 0.894506
Target:  5'- cGGUgCACG-CgGCCGACGGcgccUGGCu -3'
miRNA:   3'- -CCA-GUGUaGgCGGCUGCCuuu-ACCGc -5'
6730 3' -54 NC_001875.2 + 66415 0.68 0.894506
Target:  5'- ---gAUGUCCGCCGACGcGGAuaucGGCGc -3'
miRNA:   3'- ccagUGUAGGCGGCUGC-CUUua--CCGC- -5'
6730 3' -54 NC_001875.2 + 29262 0.68 0.880714
Target:  5'- gGGUgCGCggCCGCCGaccgcgccgGCGGGGcgcggucguGUGGCGu -3'
miRNA:   3'- -CCA-GUGuaGGCGGC---------UGCCUU---------UACCGC- -5'
6730 3' -54 NC_001875.2 + 40273 0.68 0.880714
Target:  5'- cGGUCGCGuuUCCGUacguggCGGCGGGcaAcgGGCu -3'
miRNA:   3'- -CCAGUGU--AGGCG------GCUGCCU--UuaCCGc -5'
6730 3' -54 NC_001875.2 + 36891 0.68 0.880714
Target:  5'- cGG-CACA-CCGCCGGCaGGAAcUGGg- -3'
miRNA:   3'- -CCaGUGUaGGCGGCUG-CCUUuACCgc -5'
6730 3' -54 NC_001875.2 + 7298 0.68 0.880714
Target:  5'- ---gACAUCagaGCCGACGGu--UGGUGg -3'
miRNA:   3'- ccagUGUAGg--CGGCUGCCuuuACCGC- -5'
6730 3' -54 NC_001875.2 + 253 0.69 0.85835
Target:  5'- uGGUgCAUugggCCGgCGGCGGAucgGGCGg -3'
miRNA:   3'- -CCA-GUGua--GGCgGCUGCCUuuaCCGC- -5'
6730 3' -54 NC_001875.2 + 120169 0.69 0.85835
Target:  5'- uGGUCGCG-CCGgUGGCGGGGucGGUGu -3'
miRNA:   3'- -CCAGUGUaGGCgGCUGCCUUuaCCGC- -5'
6730 3' -54 NC_001875.2 + 5127 0.7 0.825651
Target:  5'- aGGUCACGUCCGCgGACG----UGcGCc -3'
miRNA:   3'- -CCAGUGUAGGCGgCUGCcuuuAC-CGc -5'
6730 3' -54 NC_001875.2 + 98187 0.7 0.808194
Target:  5'- --cCACG-CCGCCGACGGcgucgAGGUGaGCGg -3'
miRNA:   3'- ccaGUGUaGGCGGCUGCC-----UUUAC-CGC- -5'
6730 3' -54 NC_001875.2 + 43673 0.71 0.761862
Target:  5'- cGUCACGUCCaCCGACGaccuGGAG-GGCGu -3'
miRNA:   3'- cCAGUGUAGGcGGCUGC----CUUUaCCGC- -5'
6730 3' -54 NC_001875.2 + 42068 0.72 0.722632
Target:  5'- cGG-CGCGUCCGCgGgccacuauucGCGGgcAUGGCGc -3'
miRNA:   3'- -CCaGUGUAGGCGgC----------UGCCuuUACCGC- -5'
6730 3' -54 NC_001875.2 + 40793 0.72 0.711596
Target:  5'- uGGUCGgGUCCGCCucguaguaggcgaGGCGcGugGUGGCGc -3'
miRNA:   3'- -CCAGUgUAGGCGG-------------CUGC-CuuUACCGC- -5'
6730 3' -54 NC_001875.2 + 97675 0.72 0.702504
Target:  5'- cGGUCACAauUUCGcCCGGCGGcucuAUGaGCGg -3'
miRNA:   3'- -CCAGUGU--AGGC-GGCUGCCuu--UAC-CGC- -5'
6730 3' -54 NC_001875.2 + 75228 0.75 0.518677
Target:  5'- gGGUCGCcuaaCGgCGACGGcGAUGGCGg -3'
miRNA:   3'- -CCAGUGuag-GCgGCUGCCuUUACCGC- -5'
6730 3' -54 NC_001875.2 + 1910 1.12 0.002885
Target:  5'- uGGUCACAUCCGCCGACGGAAAUGGCGg -3'
miRNA:   3'- -CCAGUGUAGGCGGCUGCCUUUACCGC- -5'
6730 3' -54 NC_001875.2 + 1958 1.12 0.002885
Target:  5'- uGGUCACAUCCGCCGACGGAAAUGGCGg -3'
miRNA:   3'- -CCAGUGUAGGCGGCUGCCUUUACCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.