miRNA display CGI


Results 61 - 80 of 123 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6731 3' -52.6 NC_001875.2 + 99343 0.68 0.939279
Target:  5'- aGCGuCGUGuccgcgcAACUUGGGCGc-GcCCGCCa -3'
miRNA:   3'- -CGC-GCAU-------UUGGACCUGCaaCuGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 33456 0.68 0.948867
Target:  5'- aGCGCGgccGGCCagUGGuCGaaagUGGCgCGCCg -3'
miRNA:   3'- -CGCGCau-UUGG--ACCuGCa---ACUG-GCGG- -5'
6731 3' -52.6 NC_001875.2 + 98744 0.68 0.934838
Target:  5'- gGUGCGUGcucAGCC-GcGACGgc-GCCGCCa -3'
miRNA:   3'- -CGCGCAU---UUGGaC-CUGCaacUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 16261 0.68 0.929669
Target:  5'- cGCGCGUGcgucACgUGGugccCGgcGACCGCa -3'
miRNA:   3'- -CGCGCAUu---UGgACCu---GCaaCUGGCGg -5'
6731 3' -52.6 NC_001875.2 + 110625 0.68 0.929669
Target:  5'- gGUGCGguuuaaacacAACCUGGugGcgcUGGCCGUg -3'
miRNA:   3'- -CGCGCau--------UUGGACCugCa--ACUGGCGg -5'
6731 3' -52.6 NC_001875.2 + 42592 0.68 0.944435
Target:  5'- cGCGCGUcAGCUcGG-CGcUGggcACCGCCa -3'
miRNA:   3'- -CGCGCAuUUGGaCCuGCaAC---UGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 66305 0.68 0.944889
Target:  5'- uGCGCGgccggcgaguugauGGCgUGGGCG---GCCGCCg -3'
miRNA:   3'- -CGCGCau------------UUGgACCUGCaacUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 78479 0.68 0.93976
Target:  5'- uGCGCGUGuuUUUGGcgcACGUcGugCGCUa -3'
miRNA:   3'- -CGCGCAUuuGGACC---UGCAaCugGCGG- -5'
6731 3' -52.6 NC_001875.2 + 59044 0.68 0.929669
Target:  5'- cGCGCGUucgcGGCCUGcaaACGcUGcuCCGCCg -3'
miRNA:   3'- -CGCGCAu---UUGGACc--UGCaACu-GGCGG- -5'
6731 3' -52.6 NC_001875.2 + 42036 0.68 0.948867
Target:  5'- gGCGCGgcGACagguguUGGACGagcagUUGuugcagcucGCCGCCg -3'
miRNA:   3'- -CGCGCauUUGg-----ACCUGC-----AAC---------UGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 117091 0.68 0.948867
Target:  5'- cGCGCGUgugGAugCUcuACGUcauUGugCGCCa -3'
miRNA:   3'- -CGCGCA---UUugGAccUGCA---ACugGCGG- -5'
6731 3' -52.6 NC_001875.2 + 85190 0.67 0.967488
Target:  5'- aGCGaGUAGuaCUGGAUGagccgacgGGCCGCCg -3'
miRNA:   3'- -CGCgCAUUugGACCUGCaa------CUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 127238 0.67 0.967488
Target:  5'- --aCGacAGCCUGGAUaaGUUGACCGUg -3'
miRNA:   3'- cgcGCauUUGGACCUG--CAACUGGCGg -5'
6731 3' -52.6 NC_001875.2 + 77502 0.67 0.967488
Target:  5'- gGCGCGU---CCaacGACG-UGACCGUCa -3'
miRNA:   3'- -CGCGCAuuuGGac-CUGCaACUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 48497 0.67 0.96422
Target:  5'- aGCGCGUuaa--UGGACuauuUUGGCgCGCCg -3'
miRNA:   3'- -CGCGCAuuuggACCUGc---AACUG-GCGG- -5'
6731 3' -52.6 NC_001875.2 + 108711 0.67 0.959637
Target:  5'- uGCGCGcAAACCcaaauccUGGACGcguuggaaaaacUGGCgCGCCa -3'
miRNA:   3'- -CGCGCaUUUGG-------ACCUGCa-----------ACUG-GCGG- -5'
6731 3' -52.6 NC_001875.2 + 108006 0.67 0.959637
Target:  5'- aGCGCGU--GCUUGGugGggUaccuggucuacucgGGCCGCUu -3'
miRNA:   3'- -CGCGCAuuUGGACCugCa-A--------------CUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 37792 0.67 0.967488
Target:  5'- -gGCGguGACUUGGACGaguccuUUGACgaCGCCa -3'
miRNA:   3'- cgCGCauUUGGACCUGC------AACUG--GCGG- -5'
6731 3' -52.6 NC_001875.2 + 9398 0.67 0.963196
Target:  5'- uCGCGUAAACUuuUGGGCGcguccauuuuaaacUUG-CCGCa -3'
miRNA:   3'- cGCGCAUUUGG--ACCUGC--------------AACuGGCGg -5'
6731 3' -52.6 NC_001875.2 + 50129 0.67 0.953057
Target:  5'- cGCGCacGUAGcgcucuuccagcGCCUGGcGCGccuucugcaUGGCCGCCu -3'
miRNA:   3'- -CGCG--CAUU------------UGGACC-UGCa--------ACUGGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.