miRNA display CGI


Results 81 - 100 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6731 3' -52.6 NC_001875.2 + 52485 0.67 0.956625
Target:  5'- gGCGCGccgaAAACUU-GACGUUGGCguguaugCGCCa -3'
miRNA:   3'- -CGCGCa---UUUGGAcCUGCAACUG-------GCGG- -5'
6731 3' -52.6 NC_001875.2 + 6676 0.67 0.95701
Target:  5'- aGCGaCGaGGACCggUGGACGgcGGCCaGCg -3'
miRNA:   3'- -CGC-GCaUUUGG--ACCUGCaaCUGG-CGg -5'
6731 3' -52.6 NC_001875.2 + 103065 0.67 0.95701
Target:  5'- cCGCGUAuuUCgagagugGGGCGUguacGGCCGCg -3'
miRNA:   3'- cGCGCAUuuGGa------CCUGCAa---CUGGCGg -5'
6731 3' -52.6 NC_001875.2 + 9398 0.67 0.963196
Target:  5'- uCGCGUAAACUuuUGGGCGcguccauuuuaaacUUG-CCGCa -3'
miRNA:   3'- cGCGCAUUUGG--ACCUGC--------------AACuGGCGg -5'
6731 3' -52.6 NC_001875.2 + 48497 0.67 0.96422
Target:  5'- aGCGCGUuaa--UGGACuauuUUGGCgCGCCg -3'
miRNA:   3'- -CGCGCAuuuggACCUGc---AACUG-GCGG- -5'
6731 3' -52.6 NC_001875.2 + 454 0.67 0.963881
Target:  5'- aGCGCGgacgaggugcUGGACCUGGccagcauGCGgcGAC-GCCa -3'
miRNA:   3'- -CGCGC----------AUUUGGACC-------UGCaaCUGgCGG- -5'
6731 3' -52.6 NC_001875.2 + 88173 0.67 0.960729
Target:  5'- cGgGCGUuuGCgC-GGGCGUUGGCUGgCu -3'
miRNA:   3'- -CgCGCAuuUG-GaCCUGCAACUGGCgG- -5'
6731 3' -52.6 NC_001875.2 + 75183 0.67 0.958525
Target:  5'- aGCGCGUAcucguucacGGCCgacGGcuGCGUgccgcauuaccaaucUGACUGCCc -3'
miRNA:   3'- -CGCGCAU---------UUGGa--CC--UGCA---------------ACUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 40294 0.67 0.96422
Target:  5'- cGUGCGgugccAGCCcaUGGAgGUgacGGCCGUCg -3'
miRNA:   3'- -CGCGCau---UUGG--ACCUgCAa--CUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 36850 0.67 0.960004
Target:  5'- gGC-CGgcGAUCUGGACGauuacguggaggUGACgCGCCc -3'
miRNA:   3'- -CGcGCauUUGGACCUGCa-----------ACUG-GCGG- -5'
6731 3' -52.6 NC_001875.2 + 37792 0.67 0.967488
Target:  5'- -gGCGguGACUUGGACGaguccuUUGACgaCGCCa -3'
miRNA:   3'- cgCGCauUUGGACCUGC------AACUG--GCGG- -5'
6731 3' -52.6 NC_001875.2 + 127238 0.67 0.967488
Target:  5'- --aCGacAGCCUGGAUaaGUUGACCGUg -3'
miRNA:   3'- cgcGCauUUGGACCUG--CAACUGGCGg -5'
6731 3' -52.6 NC_001875.2 + 77502 0.67 0.967488
Target:  5'- gGCGCGU---CCaacGACG-UGACCGUCa -3'
miRNA:   3'- -CGCGCAuuuGGac-CUGCaACUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 29701 0.66 0.979376
Target:  5'- uGCGCGagaaccgGAACUgcagauacuaaucauUGGcAUGUUGGCCaGCCu -3'
miRNA:   3'- -CGCGCa------UUUGG---------------ACC-UGCAACUGG-CGG- -5'
6731 3' -52.6 NC_001875.2 + 70450 0.66 0.978454
Target:  5'- aCGCGUAcGCguacaUGGgaaacgGCGUUGGCUGUCg -3'
miRNA:   3'- cGCGCAUuUGg----ACC------UGCAACUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 128962 0.66 0.976014
Target:  5'- -gGCGUGAG-CUGGGCGagcggaUGACgCGCUc -3'
miRNA:   3'- cgCGCAUUUgGACCUGCa-----ACUG-GCGG- -5'
6731 3' -52.6 NC_001875.2 + 54358 0.66 0.973378
Target:  5'- cGCGCGcUGGuACC-GGuucacauacagcACGUcgGGCCGCCa -3'
miRNA:   3'- -CGCGC-AUU-UGGaCC------------UGCAa-CUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 61612 0.66 0.973378
Target:  5'- cGCGCGcuGGCUUGG-CGagaacUGAUCGCUa -3'
miRNA:   3'- -CGCGCauUUGGACCuGCa----ACUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 79782 0.66 0.980705
Target:  5'- cGCGcCGUGcaaaCUGGACGcgcGACUGCg -3'
miRNA:   3'- -CGC-GCAUuug-GACCUGCaa-CUGGCGg -5'
6731 3' -52.6 NC_001875.2 + 39334 0.66 0.980488
Target:  5'- cGCGCGcUGcaggcgcAGCCU-GACGcUGAcgcCCGCCg -3'
miRNA:   3'- -CGCGC-AU-------UUGGAcCUGCaACU---GGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.