miRNA display CGI


Results 41 - 60 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6731 3' -52.6 NC_001875.2 + 85190 0.67 0.967488
Target:  5'- aGCGaGUAGuaCUGGAUGagccgacgGGCCGCCg -3'
miRNA:   3'- -CGCgCAUUugGACCUGCaa------CUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 84655 0.69 0.898145
Target:  5'- cCGCGUAGuuuuCCaUGGugGUguaaaacauggaguUGGCCGCg -3'
miRNA:   3'- cGCGCAUUu---GG-ACCugCA--------------ACUGGCGg -5'
6731 3' -52.6 NC_001875.2 + 81478 0.66 0.970538
Target:  5'- cGCGCGgcacgauGACgaGGAgGagGcGCCGCCg -3'
miRNA:   3'- -CGCGCau-----UUGgaCCUgCaaC-UGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 79782 0.66 0.980705
Target:  5'- cGCGcCGUGcaaaCUGGACGcgcGACUGCg -3'
miRNA:   3'- -CGC-GCAUuug-GACCUGCaa-CUGGCGg -5'
6731 3' -52.6 NC_001875.2 + 78479 0.68 0.93976
Target:  5'- uGCGCGUGuuUUUGGcgcACGUcGugCGCUa -3'
miRNA:   3'- -CGCGCAUuuGGACC---UGCAaCugGCGG- -5'
6731 3' -52.6 NC_001875.2 + 77502 0.67 0.967488
Target:  5'- gGCGCGU---CCaacGACG-UGACCGUCa -3'
miRNA:   3'- -CGCGCAuuuGGac-CUGCaACUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 76198 0.71 0.847159
Target:  5'- cGCGCGgcaagacacucaGGAUCUGGAgG--GGCCGCCg -3'
miRNA:   3'- -CGCGCa-----------UUUGGACCUgCaaCUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 75183 0.67 0.958525
Target:  5'- aGCGCGUAcucguucacGGCCgacGGcuGCGUgccgcauuaccaaucUGACUGCCc -3'
miRNA:   3'- -CGCGCAU---------UUGGa--CC--UGCA---------------ACUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 74428 0.7 0.879472
Target:  5'- cGCGCGUAAACCggcGcGGCGUcGcGCUGUCc -3'
miRNA:   3'- -CGCGCAUUUGGa--C-CUGCAaC-UGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 74122 0.69 0.896155
Target:  5'- gGCGCGUGuucGCCUagagcuggaguucgaGGGCGcgGcgcccGCCGCCg -3'
miRNA:   3'- -CGCGCAUu--UGGA---------------CCUGCaaC-----UGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 74050 0.66 0.973378
Target:  5'- uCGCG-AAACgC-GGuCGUgcggGACCGCCg -3'
miRNA:   3'- cGCGCaUUUG-GaCCuGCAa---CUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 72443 0.66 0.977742
Target:  5'- -aGCGUGAACCguaauucggUGGAUGUguugcgcugcagcgUGGCCGaCg -3'
miRNA:   3'- cgCGCAUUUGG---------ACCUGCA--------------ACUGGCgG- -5'
6731 3' -52.6 NC_001875.2 + 71921 0.67 0.953057
Target:  5'- uGCGCGUcgGCgaGcGCcUUGACCGCg -3'
miRNA:   3'- -CGCGCAuuUGgaCcUGcAACUGGCGg -5'
6731 3' -52.6 NC_001875.2 + 70450 0.66 0.978454
Target:  5'- aCGCGUAcGCguacaUGGgaaacgGCGUUGGCUGUCg -3'
miRNA:   3'- cGCGCAUuUGg----ACC------UGCAACUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 70200 0.69 0.924253
Target:  5'- gGCGaCGgcGACCacUGGGCGcccgagGcGCCGCCg -3'
miRNA:   3'- -CGC-GCauUUGG--ACCUGCaa----C-UGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 68287 0.66 0.970538
Target:  5'- uGCGCGUGAuuGCCUcgccGGAacugGACgCGCUg -3'
miRNA:   3'- -CGCGCAUU--UGGA----CCUgcaaCUG-GCGG- -5'
6731 3' -52.6 NC_001875.2 + 66683 0.67 0.953057
Target:  5'- aGCGgGaugggAAugCUGcACG-UGACCGCCu -3'
miRNA:   3'- -CGCgCa----UUugGACcUGCaACUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 66305 0.68 0.944889
Target:  5'- uGCGCGgccggcgaguugauGGCgUGGGCG---GCCGCCg -3'
miRNA:   3'- -CGCGCau------------UUGgACCUGCaacUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 66010 0.77 0.500623
Target:  5'- uUGCGaUGAACCUGGACGUgcccuauuaucgguUGGgCGCCc -3'
miRNA:   3'- cGCGC-AUUUGGACCUGCA--------------ACUgGCGG- -5'
6731 3' -52.6 NC_001875.2 + 65607 0.71 0.832187
Target:  5'- aCGUGUucGACCUGGcCaccGACCGCCa -3'
miRNA:   3'- cGCGCAu-UUGGACCuGcaaCUGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.