miRNA display CGI


Results 61 - 80 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6731 3' -52.6 NC_001875.2 + 7146 0.7 0.885886
Target:  5'- gGCGCGUuggccgaaGGGCCaacaucuuugcgcUGGACGc-GAUCGCCg -3'
miRNA:   3'- -CGCGCA--------UUUGG-------------ACCUGCaaCUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 12601 0.7 0.886587
Target:  5'- -aGCGUAGACCcaacuGAUGUUGG-CGCCa -3'
miRNA:   3'- cgCGCAUUUGGac---CUGCAACUgGCGG- -5'
6731 3' -52.6 NC_001875.2 + 109862 0.69 0.893469
Target:  5'- cGCGCGUuuGCCaagcUGG-CGcUGgcGCCGCCc -3'
miRNA:   3'- -CGCGCAuuUGG----ACCuGCaAC--UGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 74122 0.69 0.896155
Target:  5'- gGCGCGUGuucGCCUagagcuggaguucgaGGGCGcgGcgcccGCCGCCg -3'
miRNA:   3'- -CGCGCAUu--UGGA---------------CCUGCaaC-----UGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 84655 0.69 0.898145
Target:  5'- cCGCGUAGuuuuCCaUGGugGUguaaaacauggaguUGGCCGCg -3'
miRNA:   3'- cGCGCAUUu---GG-ACCugCA--------------ACUGGCGg -5'
6731 3' -52.6 NC_001875.2 + 31683 0.69 0.906515
Target:  5'- -aGCGU--GCC-GG-CGUgGACCGCCg -3'
miRNA:   3'- cgCGCAuuUGGaCCuGCAaCUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 42726 0.73 0.749159
Target:  5'- cGCGCGUGcgccGACCUGGcGCGgcugGGCgCGaCCa -3'
miRNA:   3'- -CGCGCAU----UUGGACC-UGCaa--CUG-GC-GG- -5'
6731 3' -52.6 NC_001875.2 + 54734 0.73 0.758938
Target:  5'- gGCGCGcc-GCC-GGGCGaagcGGCCGCCg -3'
miRNA:   3'- -CGCGCauuUGGaCCUGCaa--CUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 110965 0.72 0.768602
Target:  5'- aGCGCGUccACCUGcgcGGCGUUGuauCCGUg -3'
miRNA:   3'- -CGCGCAuuUGGAC---CUGCAACu--GGCGg -5'
6731 3' -52.6 NC_001875.2 + 27261 0.72 0.768602
Target:  5'- uGUGCGUGAACg-GGACGggcgUGGgCGUCg -3'
miRNA:   3'- -CGCGCAUUUGgaCCUGCa---ACUgGCGG- -5'
6731 3' -52.6 NC_001875.2 + 114191 0.71 0.823602
Target:  5'- cCGCGUGcuaccAUCUGGACcgcgcGGCCGCCa -3'
miRNA:   3'- cGCGCAUu----UGGACCUGcaa--CUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 65607 0.71 0.832187
Target:  5'- aCGUGUucGACCUGGcCaccGACCGCCa -3'
miRNA:   3'- cGCGCAu-UUGGACCuGcaaCUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 41028 0.73 0.739272
Target:  5'- cGCGCGUGcACCaGGAUGgcGcCCGCg -3'
miRNA:   3'- -CGCGCAUuUGGaCCUGCaaCuGGCGg -5'
6731 3' -52.6 NC_001875.2 + 125080 0.73 0.739272
Target:  5'- cGUGCGcucGGCCgaGGGCGUgGACCGCg -3'
miRNA:   3'- -CGCGCau-UUGGa-CCUGCAaCUGGCGg -5'
6731 3' -52.6 NC_001875.2 + 41988 0.73 0.729289
Target:  5'- gGCGCGgcAA-CUGGACGcgcaacUGGCCGCg -3'
miRNA:   3'- -CGCGCauUUgGACCUGCa-----ACUGGCGg -5'
6731 3' -52.6 NC_001875.2 + 94787 0.74 0.678257
Target:  5'- uGCGCGUAAugUaucACGUUGuGCCGCCg -3'
miRNA:   3'- -CGCGCAUUugGaccUGCAAC-UGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 48197 0.75 0.61581
Target:  5'- cGCGCGcccucguGCCugUGGGCGgcggccacgUGGCCGCCa -3'
miRNA:   3'- -CGCGCauu----UGG--ACCUGCa--------ACUGGCGG- -5'
6731 3' -52.6 NC_001875.2 + 128878 0.76 0.574316
Target:  5'- cGCgGCGcAGACCUGGGCGgcGAagcCCGCUg -3'
miRNA:   3'- -CG-CGCaUUUGGACCUGCaaCU---GGCGG- -5'
6731 3' -52.6 NC_001875.2 + 66010 0.77 0.500623
Target:  5'- uUGCGaUGAACCUGGACGUgcccuauuaucgguUGGgCGCCc -3'
miRNA:   3'- cGCGC-AUUUGGACCUGCA--------------ACUgGCGG- -5'
6731 3' -52.6 NC_001875.2 + 79782 0.66 0.980705
Target:  5'- cGCGcCGUGcaaaCUGGACGcgcGACUGCg -3'
miRNA:   3'- -CGC-GCAUuug-GACCUGCaa-CUGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.